Protein Info for PP_1072 in Pseudomonas putida KT2440

Annotation: Leucine-rich repeat domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1439 transmembrane" amino acids 391 to 412 (22 residues), see Phobius details PF20178: ToxA_N" amino acids 53 to 315 (263 residues), 162.7 bits, see alignment E=3.3e-51 PF13855: LRR_8" amino acids 968 to 1025 (58 residues), 39.2 bits, see alignment (E = 1.2e-13) PF12799: LRR_4" amino acids 991 to 1024 (34 residues), 28.1 bits, see alignment (E = 4.8e-10) PF00560: LRR_1" amino acids 992 to 1013 (22 residues), 11.2 bits, see alignment (E = 9.7e-05) PF14496: NEL" amino acids 1155 to 1375 (221 residues), 252.8 bits, see alignment E=6.5e-79

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1072)

Predicted SEED Role

"Leucine-rich repeat domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88NY1 at UniProt or InterPro

Protein Sequence (1439 amino acids)

>PP_1072 Leucine-rich repeat domain protein (Pseudomonas putida KT2440)
MSPHRLPNDSIDSLIAQNLPGWLVDHAQPERLDALRNALSRQAHCNARLGPILQAIPSLQ
AYAAALLKTKLRKSGFSNPDVTGWRVRVSQRLLLPSASPVLLRPTYVRRSRRSLLEAALH
NYHRRETRPGLTLKGELVDGNGNRLPMSFHAFASACREVDAGGKYQALLTHHLQPEDGPE
DEPGQAVSRLHGLFEASFKAHFEVAMRVAALKQDIDERTYFFLLPLIADKPVVPALVGTV
VPRQLYLLGRPVQGVLTLEVRPSADAVESVVLWIPDDPHQPVSRHASWDALDKYLGKRFR
TPAYRRFFARFITERERINFYRVLNERVAQASTAGVELDARSAPITDAPFVHLRRQCLAK
IRDDARVLAVPTDVEDDEDREARMQGYKELGLNVLNVAGAFVPVLGEVLLVANAVQIADE
VYEGYEDWRMGDREGALNHLFNVAANVVVGGMIAAGSKVAVRALERLAFVDDLAPVCNSA
GKVRLMATDLPGYDAQPLRGVGAQEWLWHLDEGRYRVMEDPQDGRSRILHPGRPSAYRPV
IEQNGAGGWRHELEAPQYWEGRANLIRRLSTPLAELPEPTCDYLLQVTGLSEAQIRRLHV
EHMGAPARLLDALELYQAHELHPDFSAPRLAQYVADRQVQPNGIERILRRTFPGLSARCT
RELLQQCSGAQLDTLSNAQRIPLAVAERARWSLRESRLDRACAGLRLPRCVNPDTERLAL
GLLERQLKWPDTLRIELREGSPSGRYLAGIGAESAQDVRCIVRRGDGYRYAGQGTSGPYL
AALLAALDETQTADLGDAAVSPGALGSLLIEAAAGDRTQAAELCGMPRLGVGLRPPTRFG
DGRIGYALSGRGESSRRAIGRGIHQVFPTMTDGELQAYLLDLMERRVGLWEHYSQLTGQL
ARLRQSLRQWRRDASNPLDALRRRRVATAVRRSWRRKITDEAGDYALIISGERIGSLPEL
PEGVSFDHVRRLILSDLGLGEINADFLRRFPNLIELDLSGNRLTAIPHGIEHMPRLRQLN
LRRNSVIMDEAGELRLAGMSALRYLDLSHNPLGRAPVLTRLGNLREVNLRSAGLEALPEQ
ISFRAHVDVRNNNIRTLRRELQQLRRQVHQLSLHDNPLGEADALLLDEARGVAPGQWGSA
SARHRAIDSDLFNTWANSTADAERDRQQAIWTALLEEPHSDGMFRFLADFVHGEDFEQHP
GHYRSRIWRILETCEQHEQLRHQLFLEASGPRSCEDRLLLLLEQMELGVLVLRAVEDAHG
SRMEARLLSLARGLFRLDEVDRHATLHVQRMHAEHAPHIDEIETRLFYRQRLARPLGLPI
ELDEMHYPSFANVTTSNLLRVQDAVLQNESTDALIASLAQRPFWEQYAREFHAQRFEDLV
QPLHQRMEALQAQVDEQVISENEFLQRCEALKADFDRSERALLARLAREAYERWANTPP