Protein Info for PP_1029 in Pseudomonas putida KT2440

Annotation: conserved membrane protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 49 to 67 (19 residues), see Phobius details amino acids 79 to 97 (19 residues), see Phobius details amino acids 104 to 121 (18 residues), see Phobius details amino acids 134 to 159 (26 residues), see Phobius details amino acids 173 to 193 (21 residues), see Phobius details amino acids 199 to 217 (19 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details PF01925: TauE" amino acids 16 to 244 (229 residues), 100.5 bits, see alignment E=6e-33

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 100% identity to ppf:Pput_1069)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88P24 at UniProt or InterPro

Protein Sequence (251 amino acids)

>PP_1029 conserved membrane protein of unknown function (Pseudomonas putida KT2440)
MLAQLSFSGLDWLPILFAIAAAYIVFGIAGFGTALVAGPVLIHFMPLSRIIPLLVLLDFV
AAFGNLLPSRRDVVRSELLRLLPFMALGCTLGVVFLLQLKSDLLLLLMGVFVTAYALYGL
AVKVRPASLSGFWAVPMGTAGGLFGALFGSGGFLYALYLSARLEVKEQVRATQSALISCS
TIVRLSLFLIAGVYADQRLLLLAACLLPVMFIGLWVGRRLTNRLSREAFVRLVTWLVLAS
GLALIGRYLSA