Protein Info for PP_0938 in Pseudomonas putida KT2440

Annotation: conserved protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1273 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details transmembrane" amino acids 1217 to 1236 (20 residues), see Phobius details PF13116: YhdP" amino acids 10 to 1263 (1254 residues), 740.3 bits, see alignment E=2.5e-226 TIGR02099: TIGR02099 family protein" amino acids 13 to 1272 (1260 residues), 1113.3 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_0938)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88PB2 at UniProt or InterPro

Protein Sequence (1273 amino acids)

>PP_0938 conserved protein of unknown function (Pseudomonas putida KT2440)
MAMGRLNRVLVALTRWGLGICALLAVLVALYVSLGRELVPLVAEYRADVESKAEQALGLP
VHVGALEGHWSGLAPVLRVRDLQLGEGTKALRLDDVMVVPDIWASLTAREVRLARIQLGG
LQLILRENEQGAWNLEGLPKKDDAPLDPADLLQRLRQLGRIDVFDSLVTLHPWQRDPLTL
TYVSAGLQAGAKRQALDLRATLPDGQPLALSLNSRMSAEAWRDGEVEAYVSLPQSDWAHW
LPPRVLGQWHADTLRAGGEFWIGWGKGQLQRAVVRLNAPRLEGAYAGRKAANLNNLALGA
WFQRREQGFDVVVDSLAMDLGKARWESHLQLQQRPGQNAADESWQLQADRLDLTPLTPLI
DALAPLSDKVKDVVDGLKVTGALRNVRLEARPKAEGDQRLQFAANLEKVGFDAYHNAPAA
GNVSGSISGDLGHGELRLDTDAFMLHLYPIFAKPWHYQKANARLTWTLDKDGFTLIAPYL
KVLGEEGKIAGDFLIRLLFEEGREDYMDLRVGLTEGDGRYTAKYLPEVLSPALDEWLRSA
IVKGAVDEGYFQYQGSLNHGASPQARSISLFFKVHDAALDFQPGWPQVQHVDGDVFIEDS
GVRIKAQRGVLLDTKVSDVNVDIPHVDGDQHSHLYLDGDFDGSLGDGLKILKEAPIGTGE
IFAGWEGEGPLKGKVKLDIPLAHGQRPKVQVDFATHDARLKVAPPSLELNRLKGDFSFDF
DKGLSGKGISLQAFGKPVTAQITAEGQAGQMQTRINANGQVSLKTLTDWLQFKQALPASG
DLPYQLQLSLGSRDNRLSVTSSLKGLAIDLPAPFGKAAADTRDSRFSMSLQGPERQFDAA
YADLARFAYAAPAENLTQGRGELVLGTGDARVPASQGLRVRGRLETLDLAPWQEQAGRLA
GDDPGGSARQNLQSVDLSIGQLKAFGMDLNQAVVRLARGGPAWDLRLDSKEVIGNARVPD
AKGAPVVVRMQTLRLPAASAAEQQAEDGPDPLASFDPRKVPALDLSIDKLYRGDDLYGSA
AIKLRPTPRGVTASDIDLDLKGLRIDGGGGWEGETGKTSSWYKGRLDGKNLADVLSAWGF
APTVTSRDFRLDVDGRWPGSPAAVGLKRFSGSMDAALRTGQFVEVEGSAQALRVFGLLNF
NSIGRRLRLDFSDLFDKGLAYDRVKGLLVASSGVYVTREPITVTGPSSNFELDGTLDMVS
DRVDADLQVSLPVTNNLPLAALIVGAPAVGGALFLVDRLIGDRVSRFASVHYRVEGPWKE
PRITFVKPFEKSR