Protein Info for PP_0863 in Pseudomonas putida KT2440

Annotation: conserved protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 PF08238: Sel1" amino acids 41 to 75 (35 residues), 26.1 bits, see alignment 4.8e-10 amino acids 76 to 110 (35 residues), 22.2 bits, see alignment 8.6e-09 amino acids 115 to 147 (33 residues), 33.2 bits, see alignment 2.8e-12 amino acids 148 to 183 (36 residues), 24.5 bits, see alignment 1.6e-09

Best Hits

KEGG orthology group: K07126, (no description) (inferred from 100% identity to ppu:PP_0863)

Predicted SEED Role

"FOG: TPR repeat, SEL1 subfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88PI7 at UniProt or InterPro

Protein Sequence (256 amino acids)

>PP_0863 conserved protein of unknown function (Pseudomonas putida KT2440)
MSYLLRREEVVDVAGLQAMLEETPGKAAQAILAAAGQGVVEAQLLLGQILLDGRGIQQDA
TVARRWFGIAAQGGSAMAHNMLGRCLEHGWGGEVNLVQAAVHYARAADSGLDWGLYNLGN
LLATGRGVPANQVQALMCYEKAAQLGHAKSMNLYGRYLEQGIATAPSPARAVRWYRRSAE
AGDFRGMFSLALVLVERGQLAEAGQWLEQARVAGNMNFLRAALVTLQDAGPVLMAFAARY
AEEIDRREEAGTGEHT