Protein Info for PP_0714 in Pseudomonas putida KT2440

Annotation: Transporter, PerM family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 transmembrane" amino acids 15 to 36 (22 residues), see Phobius details amino acids 42 to 58 (17 residues), see Phobius details amino acids 70 to 92 (23 residues), see Phobius details amino acids 157 to 185 (29 residues), see Phobius details amino acids 215 to 241 (27 residues), see Phobius details amino acids 247 to 276 (30 residues), see Phobius details amino acids 280 to 298 (19 residues), see Phobius details amino acids 317 to 349 (33 residues), see Phobius details PF01594: AI-2E_transport" amino acids 23 to 348 (326 residues), 99.6 bits, see alignment E=1.1e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_0714)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88PY4 at UniProt or InterPro

Protein Sequence (365 amino acids)

>PP_0714 Transporter, PerM family (Pseudomonas putida KT2440)
MQSSFKLDSALSRGLLDVLIKAGLVAALVIFAFQVFQPFLELMLWAVILAVTLYPLHCRI
QHRTGLKQGYAATLVVLLVLVLLLVPIYLVVMSIGESVDSLVTLLKSGAWSVPVPPDSVA
AWPLIGPKVHALWLAASENMASVLNQWMPQIKGAGLTVLGAAASAGGAFLLFIGAIIISG
VIMAFGERGEIATQRIAMRVSGAERGKPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFV
VKGVPGAGMLAIVILMLGIAQAPATLVTLPVIIYVFNAEGFTVATIIFAIYTFVAGLADN
VLKPLLLGRGVDVPMPVVLIGALGGMVVKGIIGLFIGPVILGVTYVLFWQWVALQVPEQP
APPAA