Protein Info for PP_0629 in Pseudomonas putida KT2440

Annotation: conserved membrane protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 50 to 66 (17 residues), see Phobius details amino acids 78 to 101 (24 residues), see Phobius details amino acids 113 to 137 (25 residues), see Phobius details amino acids 145 to 172 (28 residues), see Phobius details amino acids 190 to 214 (25 residues), see Phobius details PF01891: CbiM" amino acids 10 to 216 (207 residues), 59.1 bits, see alignment E=2.8e-20

Best Hits

KEGG orthology group: None (inferred from 99% identity to ppf:Pput_0670)

Predicted SEED Role

"FIG028593: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88Q67 at UniProt or InterPro

Protein Sequence (235 amino acids)

>PP_0629 conserved membrane protein of unknown function (Pseudomonas putida KT2440)
MAAKGIVQVISAQVLSGTTLTLGWLGYVPLLIWAVSRVRWVELFTDRRRQHLLFGTVFCL
FALWLVRRDFDTGVSYHFIGMTAVTLLLDWPLAVLGGFMAQLGLLALGRQDLAALGVNGL
MLIGLPVLITEVCAIVVERAQPRNLFVYIFCSGFFPAALTVLVCVPAALGVLWLDGRFAL
PEWLSDFVGYLWLMMFPEAFINGMVISALVVFCPEWLETFNRTRYLQAPWKEDER