Protein Info for PP_0569 in Pseudomonas putida KT2440

Annotation: MATE efflux family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 transmembrane" amino acids 17 to 37 (21 residues), see Phobius details amino acids 50 to 72 (23 residues), see Phobius details amino acids 94 to 117 (24 residues), see Phobius details amino acids 140 to 159 (20 residues), see Phobius details amino acids 167 to 187 (21 residues), see Phobius details amino acids 194 to 215 (22 residues), see Phobius details amino acids 247 to 266 (20 residues), see Phobius details amino acids 275 to 297 (23 residues), see Phobius details amino acids 317 to 341 (25 residues), see Phobius details amino acids 359 to 380 (22 residues), see Phobius details amino acids 392 to 410 (19 residues), see Phobius details amino acids 416 to 435 (20 residues), see Phobius details TIGR00797: MATE efflux family protein" amino acids 23 to 416 (394 residues), 250.7 bits, see alignment E=1.2e-78 PF01554: MatE" amino acids 23 to 183 (161 residues), 79.4 bits, see alignment E=1.3e-26 amino acids 248 to 404 (157 residues), 58.3 bits, see alignment E=3.9e-20

Best Hits

KEGG orthology group: K03327, multidrug resistance protein, MATE family (inferred from 100% identity to ppu:PP_0569)

Predicted SEED Role

"DNA-damage-inducible protein F"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88QC5 at UniProt or InterPro

Protein Sequence (445 amino acids)

>PP_0569 MATE efflux family protein (Pseudomonas putida KT2440)
MPQLAADWRHRPTHRKVWALAAPMILSNISVPLVALVDSTVIGHLPHAHQLGAVAVGATL
FTFMVGLMGFLRMGSTGFAAQAAGRGDGAALRQVLVQGLLLAVGFALLIGLLALPFSQLA
LHAMQPSAALQQSTEDFFHTRLLGLPAALASYALVGWFLGTQNARAPLAILLTTNLLNIA
LNLWFVLGLDWGVLGSARASVIAEWSAALLGLALTRPALRAYPGQIVWAALKRWQAWRPL
LAVNRDIFLRSLALQLVFLLITVQGARLGEATVAANALLLNGLLLTAYALDGLAHAVEAL
CGHAIGARDRDTLRRSLVVACGWSLITSLGFAGLFLLGGHLFIDLQTDIESVRAAAYPYL
PYLALLPLIAVWSYLLDGLFIGATRAREMRNAMLVSVLIALPVAVAMSGLGNHGLWMAFL
GFMGLRAVTLGWVGWRLQQRDLWCR