Protein Info for PP_0566 in Pseudomonas putida KT2440

Annotation: translation-related factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 123 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR01158: putative translation initiation factor SUI1" amino acids 14 to 123 (110 residues), 116.5 bits, see alignment E=2.5e-38 PF01253: SUI1" amino acids 48 to 117 (70 residues), 64.8 bits, see alignment E=4e-22

Best Hits

KEGG orthology group: K03113, translation initiation factor 1 (inferred from 99% identity to ppg:PputGB1_0611)

Predicted SEED Role

"Translation initiation factor SUI1-related protein" in subsystem Translation initiation factors eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88QC8 at UniProt or InterPro

Protein Sequence (123 amino acids)

>PP_0566 translation-related factor (Pseudomonas putida KT2440)
MAKKASSFSALGGLVYSTDAGRHCPDCGQPVDACTCKQQIIPEGDGIARVRRESKGRGGK
TVTTVTGVPLPPDQLKELATTLKRRCGTGGALKDGVIEIQGDHVELLIGELTKQGFKAKK
SGG