Protein Info for PP_0443 in Pseudomonas putida KT2440

Annotation: 50S ribosomal protein L11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 143 TIGR01632: ribosomal protein uL11" amino acids 3 to 141 (139 residues), 211.7 bits, see alignment E=1.9e-67 PF03946: Ribosomal_L11_N" amino acids 9 to 67 (59 residues), 103.4 bits, see alignment E=4.3e-34 PF00298: Ribosomal_L11" amino acids 72 to 140 (69 residues), 90.7 bits, see alignment E=6.7e-30

Best Hits

Swiss-Prot: 100% identical to RL11_PSEPK: 50S ribosomal protein L11 (rplK) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K02867, large subunit ribosomal protein L11 (inferred from 99% identity to pen:PSEEN0478)

MetaCyc: 71% identical to 50S ribosomal subunit protein L11 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L11p (L12e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88QP5 at UniProt or InterPro

Protein Sequence (143 amino acids)

>PP_0443 50S ribosomal protein L11 (Pseudomonas putida KT2440)
MAKKIQAYIKLQVKAGQANPSPPVGPALGQHGVNIMEFCKAFNARTQGQEAGLPTPVIIT
VYSDRSFTFETKSTPASVLLKKAAGLTSGSARPNTVKVGTVTRAQLEDIAKAKQADLTAA
DLDAAVRTIAGSARSMGLNVEGV