Protein Info for PP_0288 in Pseudomonas putida KT2440

Annotation: putative Oxalate/formate antiporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 transmembrane" amino acids 32 to 55 (24 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 92 to 112 (21 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 146 to 165 (20 residues), see Phobius details amino acids 185 to 207 (23 residues), see Phobius details amino acids 216 to 238 (23 residues), see Phobius details amino acids 279 to 302 (24 residues), see Phobius details amino acids 325 to 350 (26 residues), see Phobius details amino acids 363 to 381 (19 residues), see Phobius details amino acids 387 to 412 (26 residues), see Phobius details amino acids 425 to 445 (21 residues), see Phobius details amino acids 463 to 482 (20 residues), see Phobius details amino acids 522 to 543 (22 residues), see Phobius details PF07690: MFS_1" amino acids 40 to 440 (401 residues), 96.7 bits, see alignment E=7.1e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_0288)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88R46 at UniProt or InterPro

Protein Sequence (553 amino acids)

>PP_0288 putative Oxalate/formate antiporter (Pseudomonas putida KT2440)
MTSTVATGTLASEPGFLSKERIIARPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSQA
LGITAPVACAADMGFMARMFSAECDWPISMLSWIYTLFFVFLGCSAAVLGGWLEHAGPRK
AGLVSALCWCGGMLLSAIGVKTHQLWLMWLGSGVIGGIGLGLGYISPVSTLIKWFPDKRG
MATGMAIMGFGGGAMVGAPLATALMGHFGNEHEVGVWQSFVAMAAIYFVFMTAGALAYRV
PPTGWKPEGWAAPLKNAGNAMVTDRHVHVSVAWKTPQFALIWLVLCLNVSAGIGILGMAS
PLLQEVFAGKLLGNELTFSQLSTAQLAQIAAIAAGFTGLLSLFNIGGRFFWASFSDYIGR
KNTYFAFFALGVGLYSLVPNMGHLGNVALFVAAFCIILSMYGGGFATVPAYLADLFGTQM
VGAIHGRLLTAWAAAGVLGPVLITYLREYQLAAGVERAAAYDMTLYILASLLVLGFICNM
LVRPVADKHFMSDAELAAERALSHDKGADGARSLEWKAAPGSLPLVLLAWAVVVVPLAWG
VWVTLQKTAVLFH