Protein Info for PP_0210 in Pseudomonas putida KT2440

Annotation: putative Phycobiliprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 PF13646: HEAT_2" amino acids 13 to 97 (85 residues), 45.2 bits, see alignment E=1.9e-15 amino acids 42 to 128 (87 residues), 46.3 bits, see alignment E=8.8e-16 amino acids 109 to 187 (79 residues), 35.8 bits, see alignment E=1.6e-12 amino acids 169 to 240 (72 residues), 57.6 bits, see alignment E=2.5e-19 amino acids 231 to 315 (85 residues), 56.3 bits, see alignment E=6.4e-19 PF03130: HEAT_PBS" amino acids 182 to 208 (27 residues), 16.8 bits, see alignment (E = 1.6e-06) amino acids 213 to 239 (27 residues), 19.6 bits, see alignment (E = 2e-07) amino acids 244 to 268 (25 residues), 14.5 bits, see alignment (E = 9.2e-06) amino acids 275 to 298 (24 residues), 15.4 bits, see alignment (E = 4.7e-06) PF02985: HEAT" amino acids 198 to 226 (29 residues), 20.8 bits, see alignment (E = 6.4e-08)

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_0210)

Predicted SEED Role

"HEAT repeat-containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88RC2 at UniProt or InterPro

Protein Sequence (321 amino acids)

>PP_0210 putative Phycobiliprotein (Pseudomonas putida KT2440)
MTDRTTDNPDILALLPRLDASDAGVRRIALIELADLEDPDGLPWLTDALLADAAAEVRAE
AARLLEAWEEPEVVQALCAALADAAEPVRLAAAQSLSELKSLEAGQLILPWVKHADAFVR
ASALRALRELRLEDAADPALLALADDAAAVRREAVGILGWLKHQPALLALAALAETEPDT
EVRRAAIGALGLARDSSVLPALVAALTDQAWQVREEAATTLGKVGQDQAGPALVDALADD
FWQVRLRAARSLGRLRYAAALDALGGLLGHGIANLRKEAALALGELGQARALSVLQAAEA
DSDPEVSKAVRIALAQLRGAA