Protein Info for PP_0198 in Pseudomonas putida KT2440

Annotation: putative transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 47 to 72 (26 residues), see Phobius details amino acids 74 to 74 (1 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 189 to 207 (19 residues), see Phobius details PF01810: LysE" amino acids 16 to 204 (189 residues), 108.9 bits, see alignment E=1.2e-35

Best Hits

KEGG orthology group: K05834, homoserine/homoserine lactone efflux protein (inferred from 99% identity to ppf:Pput_0219)

Predicted SEED Role

"Homoserine/homoserine lactone efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88RD4 at UniProt or InterPro

Protein Sequence (210 amino acids)

>PP_0198 putative transporter (Pseudomonas putida KT2440)
MSMEVWLGFFAACWVISLSPGAGAIASMSSGLQYGFWRGYWNALGLQLGLIMQIAIIAAG
VGAVLAASATAFQVIKWFGVGYLVYLAYKQWRALPMDMSDESGVRPIGKPLSLVFRGFLV
NISNPKALVFMLAVLPQFLNPHAPLLPQYVAITVTMVTVDLLVMAGYTGLASHVLRMLRT
PKQQKRLNRTFAGLFIGAATFLATLRRAPV