Protein Info for PP_0168 in Pseudomonas putida KT2440
Annotation: putative surface adhesion protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"T1SS secreted agglutinin RTX"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q88RG2 at UniProt or InterPro
Protein Sequence (8682 amino acids)
>PP_0168 putative surface adhesion protein (Pseudomonas putida KT2440) MSSVVAIVKSIVGQVIAVSPEGIRRVLIEGDRLLAGEEVLTGPGGAVTLELADGRLLDLG RDSQWSADAPDSSTDLSQAAAQAAPSVEELQQAIAAGVDPTTELEATAAGPSSAGGGALG GGHSFVMLEETAGRVDTTVGFPTDGLGFAGVPDNQEVGLLDTNGNNLVTTPTDTTVATEL TLGATPSISEAGGVIVYTATVGQAPTTNLVITLSNGAVIVIPAGQTSGSVNVAVPANDTP YIDGGQISATVTGSTGGGGLTVTLPQTPAVTQVTDTIDTTTATLTASPSVTEGGVITYTV TLSNPAQTPVTVTLSNGQVITVEAGKTQGSVDFQTPANDVYNNGSTVSVTIENATGGNFE QLTPNPTPAQTTINDSVDTTTATLTASPSVTEGGVITYTVTLSNPAQTPVTVNLSNGQTI TVEAGKTQGSVDFQTPANDVYNNGSTVSVTIESATGGNFEQLTPNPTPAQTTINDSVDTT TATLTASPSVTEGGVITYTVTLSNPAQTPVTVTLSNGQTITVEAGKTQGSVDFQTPANDV YNNGSTVSVTIENATGGNFEQLTPNPTPAQTTINDSVDTTTATLTASPSVTEGGVITYTV TLSNPAQTPVTVTLSNGQTITVEAGKTQGSVDFQTPANDVYNNGSTVSVTIENATGGNFE QLTPNPTPAQTTINDSVDATTATLTASPSVTEGGVITYTVTLSNPAQTPVTVTLSNGQTI TVEAGKTQGSVDFQTPANDVYNNGSTVSVTIENATGGNFEQLTPNPTPAQTTINDSVDAT TATLTASPSVTEGGVITYTVTLSNPAQTPVTVTLSNGQTITVEAGKTQGSVDFQTPANDV YNNGSTVSVTIENATGGNFEQLTPNPTPAQTTINDSVDATTATLTASPSVTEGGVITYTV TLSNPAQTPVTVTLSNGQVITVEAGKTQGSVDFQTPANDVYNNGSTVSVTIENATGGNFE QLTPNPTPAQTTINDSVDATTATLTASPSVTEGGVITYTVILSNPAQTPVTVTLSNGQTI TVEAGKTQGSVDFQTPANDVYNNGSTVSVTIENATGGNFEQLTPNPTPAQTTITDSVDTT TATLTASPSVTEGGVITYTVTLSNPAQTPVTVTLSNGQTITVEAGKTQGSVDFQTPANDV YNNGSTVSVTIESATGGNFEHLTPNPTPASTVINDSIDTVTVSIVSNGNVTEDQQPSFTV KVSQALDRPLTVTLSNGDTVTIEAGKTEVEYKTSVQGDDVYLDAGSITLSVTDATVPGAT FEKLALGGPATVEISDTISEVVAKLTATPSVTEGGEITYTITLTNKDGLPINNHSELYFK LTDGTTVVVAANSTTGSATVAAPDNVYVGTNQPVVNAIDAVSGADAWKFENLNLDKTPVS TEVTDEPGTPGNEGDIVKVTITADQTSVAENVKPTFTVHINTALAHDLVVTLSNNAQVTI KAGETSAPYTHDAQGDDVYQDAGQISLGINSAVDATGAAFENLELGGAAKVDVTDTLDEV VAKLTATPSVTEGGEITYTITLTNKDGLPINNHSELYFKLTDGTTVVVAANSTTGSATVA APDNVYVGTNQPVVNAIDAVSGADAWKFENLNLDKTPVSTEVTDEPGTPGNEGDIVKVTI TADQTSVAENVKPTFTVHVNQPLAHDLVVTLSNNAQVTIKAGETSAPYTHDAQGDDVYQD AGQISLGINSAVDATGAAFENLELGGAASVQVTDTLDEVVAKLTATPSVTEGGEITYTIT LTNKDGLPINNHSELYFKLTDGTTVVVAANSTTGSATATAPDNVYVGTNAPVINAIDAVS GADAWKFENLNLDKTPVSTEVTDEPGTPGNEGDIVKVTITADQTSVAENVKPTFTVHVNQ PLAHDLVVTLSNNAQVTIKAGETSAPYTHDAQGDDVYQDAGQISLGINSAVDATGAAFEN LELGGSASVQVTDTLDEVVAKLTATPSVTEGGEITYTITLTNKDGLPINNHSELYFKLTD GTTVVVAANSTTGSATATAPDNVYVGTNAPVVNAIDAVSGADAWKFENLNLDKTPVSTEV TDEPGTPGNEGDIVKVTITADQASVAENVKPTFTVHVNQPLAHDLVVTLSNNAQVTIKAG ETSAPYTHDAQGDDVYQDAGQISLGITSAVDVDGHTFENLQLGGNASVQVTDTLDEVVAK LTATPSVTEGGEITYTITLTNKDGLPINNHSELYFKLTDGTTVVVAANSTTGSATATAPD NVYVGTNAPVVNAIDAVSGADAWKFENLNLDKTPVSTTVTDEPGTPGNEGDIVKVTITAD QTSVAENVKPTFTVHVNQPLAHDLIVTLSNNAQVTIKAGETSAPYTHDAQGDDVYQDAGQ ISLGINSAVDATGAAFENLQLGGNASVQVTDTLDEVVAKLTATPSVTEGGEITYTITLTN KDGLPINNHSELYFKLTDGTTVVVAANSTTGSATVAAPDNVYVGTNAPVVNAIDAVSGAD AWKFENLNLDKTPVSTTVTDEPGTPGNEGDIVKVTITADQTSVAENVKPTFTVHVNQPLA HDLVVTLSNNAQVTIKAGETSAPYTHDAQGDDVYQDAGQISLGITSAVDVDGHTFENLQL GGNASVQVTDTLDEVVAKLTATPSVTEGGEITYTITLTNKDGLPINNHSELYFKLTDGTT VVVAANSTTGSATATAPDNVYVGTNAPVVNAIDAVSGADAWKFENLNLDKTPVSTEVTDE PGTPGNEGDIVKVTITADQTSVAENVKPTFTVHINTALAHDLVVTLSNNAQVTIKAGETS APYTHAAQGDDVYNDAGQISLGITSAVDATGATFENLALGGAAKVDVTDTTDEVVAKLTA TPSVTEGGEITYTITLTNKDGLPINNHSALTFTLSDGKTVITVPANGTVGTATVTAPDNV YVGTNDPVIKSIATVEGADVGKFEQLTLDKTPVSTSVTDEPGTPGNEGDLVKVTITADQT SVAENVKPTFTVHVNQPLAHDLVVTLSNNAQVTIKAGETSAPYTHAAQGDDVYNDAGQIS LGITSAVDATGATFENLELGGAAKVDVTDTTDEVVAKLTATPSVTEGGEITYTITLTNKD GLPINNHSALTFTLSDGKTVITVPANGTVGTATVTAPDNVYVGTNDPVIKSIATVEGADV GKFEQLTLDKTPVSTTVTDEPGTPGNPGGSNEGDLVKVTITADQTSVAENVKPTFTVHVN QPLAHDLVVTLSNNAQVTIKAGETSAPYTHAAQGDDVYNDAGQISLGINSAVDATGATFE NLELGGAAKVDVTDTTDEVVAKLTATPSVTEGGEITYTITLTNKDGLPINNHSALTFTLS DGKTVITVPANGTVGTATVTAPDNVYVGTNDPVIKSIATVEGADVGKFEQLTLDKTPVST TVTDEPGTPGNPGGSNEGDLVKVTITADQTSVAENVKPTFTVHVNQPLAHDLVVTLSNNA QVTIKAGETSAPYTHAAQGDDVYNDAGQISLGITSAVDVDGRTFENLELGGAASVQVTDT TDEVVAKLTATPSVTEGGEITYTITLTNKDGLPINNHSALTFTLSDGKTVITVPANGTVG TATVTAPDNVYVGTNDPVIKSIATVEGADVGKFEQLTLDKTPVSTTVTDEPGTPGNPGGS NEGDLVKVTITADQTSVAENVKPTFTVHVNQPLAHDLVVTLSNNAQVTIKAGETSAPYTH AAQGDDVYNDAGQISLGINSAVDATGATFENLQLGGNASVQVTDTTDEVVAKLTATPSVT EGGEITYTITLTNKDGLPINNHSALTFTLSDGKTVITVPANGTVGTATVTAPDNVYVGTN DPVIKSIATVEGADVGKFEQLTLDKTPVSTSVTDEPGTPGNEGDLVKVTITADQTSVAEN VKPIFTVHVNQPLAHDLVVTLSNNAQVTIKAGETSAPYTHAAQGDDVYNDAGQISLGITS AVDVDGRTFENLQLGGNASVQVTDTTDEVVAKLTATPSVTEGGEITYTITLTNKDGLPIN NHSALTFTLSDGKTVITVPANGTVGTATVTAPDNVYVGTNDPVVMSIATVGGADVGKFEQ LTLDKTPVSTTVTDEPGTPGNPGGSNEGDLVKVTITADQTSVAENVKPTFTVHVNQPLAH DLVVTLSNNAQVTIKAGETSAPYTHAAQGDDVYNDAGQISLGINSAVDATGATFENLALG GAAKVDVTDTTDEVVAKLTATPSVTEGGEITYTITLTNKDGLPINNHSALTFTLSDGKTV ITVPANGTVGTATVTAPDNVYVGTNDPVIKSIATVEGADVGKFEQLTLDKTPVSTSVTDE PGTPGNEGDLVKVTITADQTSVAENVKPTFTVHVNQPLAHDLVVTLSNNAQVTIKAGETS APYTHAAQGDDVYNDAGQISLGITSAVDVDGRTFENLQLGGAATVQVTDTTDEVVAKLTA TPSVTEGGEITYTITLTNKDGLPINNHSALTFTLSDGKTVITVPANGTVGTATVTAPDNV YVGTNDPVIKSIATVEGADVGKFEQLTLDKTPVSTSVTDEPGTPGNEGDLVKVTITADQT SVAENVKPTFTVHVNQPLAHDLVVTLSNNAQVTIKAGETSAPYTHAAQGDDVYNDAGQIS LGINSAVDATGATFENLQLGGAATVQVTDTTDEVVAKLTATPSVTEGGEITYTITLTNKD GLPINNHSALTFTLSDGKTVITVPANGTVGTATVTAPDNVYVGTNDPVVMSIATVGGADV GKFEQLTLDKTPVSTSVTDEPGTPGNEGDLVKVTITADQTSVAENVKPTFTVHVNQPLAH DLVVTLSNNAQVTIKAGETSAPYTHAAQGDDVYNDAGQISLGINSAVDATGATFENLELG GAAKVDVTDTTDEVVAKLTATPSVTEGGEITYTITLTNKDGLPIDKHAALTFTLDDGKTT ITIPANGTTGTATVTAPDNVYVGTNDPVVMSIATVGGADVGKFEQLTLDKTPVSTSVTDE PGTPGNEGDLVKVTITADQTSVAENVKPTFTVHVNQPLAHDLVVTLSNNAQVTIKAGETS APYTHAAQGDDVYNDAGQISLGITSAVDVDGRTFENLELGGAASVQVTDTLDEVVAKLTA TPSVTEGGEITYTITLTNKDGLPINNHSALTFTLSDGKTVITVPANGTVGTATVTAPDNV YVGANDPVVMSIATVEGADVGKFEQLTLDKTPVSTSVTDEPGTPGNEGDLVKVTITADQT SVAENVKPTFTVHVNQPLAHDLVVTLSNNAQVTIKAGETSAPYTHAAQGDDVYNDAGQIS LGITSAVDATGATFENLELGGAASVQVTDTTDEVVAKLTATPSVTEGGEITYTITLTNKD GLPINNHSALTFTLSDGKTVITVPANGTVGTATVTAPDNVYVGSNDPVVMSIATVGGADV GKFEQLTLDKTPVSTSVTDEPGTPGNEGDLVKVTITADQTSVAENVKPTFTVHVNQPLAH DLVVTLSNNAQVTIKAGETSAPYTHAAQGDDVYNDAGQISLGINSAVDATGATFENLQLG GNASVQVTDTTDEVVAKLTATPSVTEGGEITYTITLTNKDGLPINNHSALTFTLSDGKTV ITVPANGTVGTATVTAPDNVYVGTNDPVVMSIATVGGADVGKFEQLTLDKTPVSTTVTDE PGTPGNPGGSNEGDLVKVTITADQTSLAENVKPTFTVHVNQPLAHDLVVTLSNNAQVTIK AGETSAPYTHAAQGDDVYNDAGQISLGINSAVDATGATFENLELGGAASVQVTDTTDEVV AKLTATPSVTEGGEITYTITLTNKDGLPINNHSALTFTLSDGKTVITVPANGTVGTATVT APDNVYVGSNDPVVMSIATVGGADVGKFEQLTLDKTPVSTSVTDEPGTPGNEGDLVKVTI TADQTSVAENVKPTFTVHVNQPLAHDLVVTLSNNAQVTIKAGETSAPYTHAAQGDDVYND AGQISLGINSAVDATGATFENLELGGAASVQVTDTTDEVVAKLTATPSVTEGGEITYTIT LTNKDGLPINNHSALTFTLSDGKTVITVPANGTVGTATVTAPDNVYVGSNDPVVMSIATV GGADVGKFEQLTLDKTPVSTSVTDEPGTPGNEGDLVKVTITADQTSVAENVKPTFTVHVN QPLAHDLVVTLSNNAQVTIKAGETSAPYTHAAQGDDVYNDAGQISLGINSAVDATGATFE NLELGGAAKVDVTDTTDEVVAKLTATPSVTEGGEITYTITLTNKDGLPINNHSALTFTLS DGKTVITVPANGTVGTATVTAPDNVYVGTNDPVVMSIATVEGADVGKFEQLTLDKTPVST SVTDEPGTPGNEGDLVKVTITADQTSVAENVKPTFTVHINTALAHDLVVTLSNNAQVIIK AGETSAPYTHAAQGDDVYNDAGQISLGINSAVDATGATFENLQLGGNASVQVTDTTDEVV AKLTATPSVTEGGEITYTITLTNKDGLPINNHSALTFTLSDGKTVITVPANGTVGTATVT APDNVYVGTNDPVVMSIATVEGADVGKFEQLTLDKTPVSTSVTDEPGTPGNEGDPVKVTI TADQTSVAENVKPTFTVHVNQPLAHDLVVTLSNNAQVTIKAGETSAPYTHDAQGDDVYND AGQISLGINSAVDATGATFENLELGGAASVQVTDTTDEVVAKLTATPSVTEGGEITYTIT LTNKDGLPIDKHAALTFTLDDGKTTITIPANGTTGTATVTAPDNVYVGTNDPVVMSIATV GGADVGKFEQLTLDKTPVSTSVTDEPGTPGNEGDLVKVTITADQTSVAENVKPTFTVHVN QPLAHDLVVTLSNNAQVTIKAGETSAPYTHAAQGDDVYNDAGQISLGITSAVDVDGRTFE NLELGGAASVQVTDTLDEVVAKLTATPSVTEGGEITYTITLTNKDGLPINNHSALTFTLS DGKTVITVPANGTVGTATVTAPDNVYVGANDPVVMSIATVEGADVGKFEQLTLDKTPVST SVTDEPGTPGNEGDLVKVTITADQTSVAENVKPTFTVHVNQPLAHDLVVTLSNNAQVTIK AGETSAPYTHAAQGDDVYNDAGQISLGITSAVDVDGRTFENLQLGGAATVQVTDTTDEVV AKLTATPSVTEGGEITYTITLTNKDGLPINNHSALTFTLSDGKTVITVPANGTVGTATVT APDNVYVGTNDPVIKSIATVEGADVGKFEQLTLDKTPVSTSVTDEPGTPGNEGDLVKVTI TADQTSVAENVKPTFTVHVNQPLAHDLVVTLSNNAQVTIKAGETSAPYTHAAQGDDVYND AGQISLGINSAVDATGATFENLQLGGAATVQVTDTTDEVVAKLTATPSVTEGGEITYTIT LTNKDGLPINNHSALTFTLSDGKTVITVPANGTVGTATVTAPDNVYVGTNDPVVMSIATV GGADVGKFEQLTLDKTPVSTSVTDEPGTPGNEGDLVKVTITADQTSVAENVKPTFTVHVN QPLAHDLVVTLSNNAQVTIKAGETSAPYTHAAQGDDVYNDAGQISLGINSAVDATGATFE NLELGGAAKVDVTDTTDEVVAKLTATPSVTEGGEITYTITLTNKDGLPINNHSALTFTLS DGKTVITVPANGTVGTATVTAPDNVYVGTNDPVIKSIATVGGADVGKFEQLTLDKTPVST AVTDEPGSGTPGTGNKGDVTTVGITGTTSLTEGETGQYTLTLSNASKSEVTITLSYSGTA QNGDDFTGVATVKIPANSTGTTFNIATLNDKLVEGTENFVVKIETATGGNFENLQVDSSK SSVTTTILDNDHLPVSPGGAVFGVEDTDYVFAWSDFKVTDADGNTNLSVTITSLPAAGNL QFFNGTAWVNVAVGQVVSQADITAKNLKFVPALNQSGADNYGGNGVGNQKADYAQFKFKP NDGTNLGSEVTMKVDISPVADKPTLSFGSADIESKGLTKEVWTSLKGLGTGGNGITGEDL KTVFANSGSANSSSTTTNVQSDGSVTAGTGSKTSGLIYLEAGKVYTFSGLADDSFVVTIG GKTVVTATWGAGGGVSGTFTPNTSGYYPIEVYHANQSGPGSYDLNIQVGSGAVTDLSSSN VKMYQNVTEMANAGLGVSDLHTVNGQSYYDGYKLNEGPEGGSVKLVGISTALTDTDGSES LNVTLSGIPKGTVLSDGAGHTVTVGTAPVDVTGWKLSSLTLTPPAYYKGSFDITVTSTAT ESLGGSAITTGNIPVTVYGATYKASVGTSGNDTLTGSEGNDIFVADVSGLNVVQGKNYNI AFMVDSSGSMSDKSIADAKTQLASVFNTLKASLGSDTSGTVNIFLVDFDTQVNKNVAVNL ADPDALSKLQAVLNSMVGGYYGGGTNYEDAFKTTSNFFNSTMATSNKGAENLTYFITDGK PTYYQSNESTNPSLWKNGKSLDDVVNVNNYKMGDTFSAWADATHKVEISSSGVVKVLTYT ENRRGELVLDSTKTVGTLHAQGDGTYEFSSLDGTGYADYWNYVYSAAGSTESFAVLGGTN GLSKVQAIGLNSDVTLNDLKPYDSAGKPQTNIDPSDLAKAILGHSEATVPGADTIDSGNG NDIIFGDLITLNGVVSEGYQALQTYVAQKSGVEVGAVTTSNVHQYITEHYTEFDISGAKD GNDILSGGNGNDILFGQGGSDTLNGGKGNDILLGGTGNDTLIGGQGDDILIGGSGADTFV WKAGDVGNDVIKDFNKAEGDRIDLKDLLQGEKGSTIDNYLKLTTVEGTTTLQVSSEGKLN AEGGIANADVTIKLEGVNWSNQTINSLISGADPTIIIHNKDS