Protein Info for PP_0111 in Pseudomonas putida KT2440

Annotation: Electron transport protein SCO1/SenC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF00578: AhpC-TSA" amino acids 51 to 125 (75 residues), 35.2 bits, see alignment E=1.1e-12 PF02630: SCO1-SenC" amino acids 56 to 185 (130 residues), 138.4 bits, see alignment E=1.5e-44

Best Hits

Swiss-Prot: 47% identical to SCOP_PSEST: Putative copper-binding protein (scoP) from Pseudomonas stutzeri

KEGG orthology group: K07152, (no description) (inferred from 100% identity to ppf:Pput_0128)

Predicted SEED Role

"Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone" in subsystem Biogenesis of cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88RL8 at UniProt or InterPro

Protein Sequence (210 amino acids)

>PP_0111 Electron transport protein SCO1/SenC (Pseudomonas putida KT2440)
MTRTQKTVFILVALVALILGLTVNKVLNGRDQPNPAELIDAGIILLPQSRAVADVTMTNQ
DGQPVQMDDLKGKWSLLFFGYTYCPDICPTTLAQLRQVKSELPKDAVDRLQVVLVSVDPN
RDTPNQLKQYLGYFDKDFVGVAGSIEDTQKLANALSIPFIPADTSKPGYTVDHSGNLAIV
GPDGRQRGFIRAPFNNQKLGAQLPGLVKRD