Protein Info for PP_0033 in Pseudomonas putida KT2440

Annotation: putative undecaprenyl-glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 484 transmembrane" amino acids 10 to 31 (22 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 115 to 137 (23 residues), see Phobius details amino acids 140 to 141 (2 residues), see Phobius details amino acids 166 to 196 (31 residues), see Phobius details amino acids 206 to 225 (20 residues), see Phobius details amino acids 267 to 286 (20 residues), see Phobius details amino acids 298 to 322 (25 residues), see Phobius details amino acids 345 to 366 (22 residues), see Phobius details PF02366: PMT" amino acids 32 to 237 (206 residues), 91.6 bits, see alignment E=6.1e-30 PF13231: PMT_2" amino acids 65 to 219 (155 residues), 54.2 bits, see alignment E=2.1e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_0033)

Predicted SEED Role

"Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88RU6 at UniProt or InterPro

Protein Sequence (484 amino acids)

>PP_0033 putative undecaprenyl-glycosyl transferase (Pseudomonas putida KT2440)
MLNLKNERTLWWVLGSILLLRLVGLGIYPLMDTSEARYAEMARKMVELNDWITPMFDYGV
PFWGKPPLSFWTQAASMTVFGVNEFAARFPAWLLHLASCFIIIKLGTQQISRNAGIWAAI
IFSSTTLGLVSSGVVLTDPVLSFSILLASYGFWRWMKCASKADAYLMFAGLGLGLLAKGP
LTLVLMGAPAFAWFVIYKEWGRVLRLPWISGLVLMFGISVPWYVAAEMKTPGFMEYFFVG
EHWSRYVVSNWAGDLYGSAHAKPYGSIWIQLGLSLLPWALFLPLLIRKRGSMQRFKAYLW
LWALATPVFFTFAGNILWTYLLPALPAWALLLSARVSEVGPKTTWAAAASALVLPIIGAG
IIYAGVLEERPQNQRDVVQAWLNVQSAHSAPLIYPGRRSYSSEFYSSGKSENIKDPAKWP
RDGSFYLSRRLRDSKDGLPADLACTSITEANASQLLLCHWKRPAQGAEGLAGESNAETPR
KNEG