Protein Info for PFR28_05225 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 355 transmembrane" amino acids 30 to 53 (24 residues), see Phobius details PF10095: DUF2333" amino acids 35 to 355 (321 residues), 530.3 bits, see alignment E=8.3e-164

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a638)

Predicted SEED Role

"FIG014328: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (355 amino acids)

>PFR28_05225 hypothetical protein (Pseudomonas sp. RS175)
MLDWKNRAGSAPERAAEPKSATRSYLGGLFFSRALATLVGLYLLVTIAIGWYWSQEPSLF
PVQQNAQAAAEKDGRQMVVGYTTVETLKSVAGTLLTKPGGYISNDRFPPGLWMDNMSSWE
YGVLVQVRDLSRALRKDFARSQSQSAEDADLAKAEPRFNFDNRSWVLPSSESEYQEGINS
LSRYQARLSDPSQKSALFYARADNLNNWLGDVGTRLGSLSQRLSASVGRVKLNTALKTEA
PAPGQVPEVDEERVETPWLQIDNVFYEARGQAWALSHLLRAIEVDFADVLAKKNATVSVR
QIIRELEASQEPIWSPMILNGSGFGVLANHSLVMANYISRANAAVIDLRQLLNQG