Protein Info for PFR28_02876 in Pseudomonas sp. RS175
Annotation: Formylglycine-generating enzyme
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 88% identity to pba:PSEBR_a3914)MetaCyc: 66% identical to dihydropyoverdine dehydrogenase (Pseudomonas aeruginosa PAO1)
RXN-20771
Predicted SEED Role
"PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV)" in subsystem Siderophore Pyoverdine
MetaCyc Pathways
- pyoverdine I biosynthesis (7/11 steps found)
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (298 amino acids)
>PFR28_02876 Formylglycine-generating enzyme (Pseudomonas sp. RS175) MNRELHSFSVKTLPALALAAATGLLCIGAQAAQPGQVFRDCKDCPQMVVLPSGTFTMGTP DDEVGREPDEGPMHPVTFARPVAISRFQVLKGEWFAYLQDTGYTMPDADKRPGRACKAGV PDYQGSDPGKQYTDMHPAVCMNFEEANAYVAWLSKKTGKQYRLVSESLREYAARGGSTGP FPFPFDDGKDYSIAQHANTYGAADGYNFTSPAGRFAPNAFGVYDMHGNVYEWTADCYNPD YVGAPSDGSAWLSGDCKVRRIRGNDWGEAPVFSRSGNRNAVYPDARGDWLGFRVARDM