Protein Info for PFR28_02306 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF00190: Cupin_1" amino acids 60 to 130 (71 residues), 24.1 bits, see alignment E=3.6e-09 PF07883: Cupin_2" amino acids 72 to 129 (58 residues), 40.9 bits, see alignment E=2.1e-14 PF02627: CMD" amino acids 178 to 241 (64 residues), 27.4 bits, see alignment E=4e-10 amino acids 300 to 382 (83 residues), 38.2 bits, see alignment E=1.8e-13

Best Hits

KEGG orthology group: None (inferred from 84% identity to pba:PSEBR_a2552)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>PFR28_02306 hypothetical protein (Pseudomonas sp. RS175)
MKKTLIGIAVCAAAPFTGAVGSDSAGESRMSQQISRAGSQAVVAGPGEFFTGQVRVEPLF
PAAADIDASGAYVSFEPGARSAWHTHPAGQRLVVVSGVGLTQEWGKPVQRIHPGDVIVCP
PGVKHWHGAAPMSAMTHLAITGTVDGKNVEWMEQVSDQQYNAGATLTSPARSDAQAVSAT
LSAKQQAIPLIAAAMATSDMPGLDAALNRGLDAGLTISEAKEILVQLYAYSGFPRSLNAL
GELMKVVEARKQDGVQDDPGREPARAIPTGDALLAAGRANQTRIAGAPVQGPLFDFVPVI
NQYLQTHLFGDIFERDNLDWQSRELATVAALAVTPGVESQLRSHMAASLRVGLSVTQLRQ
LIGLLGEQGNAAAARRATEALDAVQPRQPS