Protein Info for PFR28_00351 in Pseudomonas sp. RS175

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details PF12729: 4HB_MCP_1" amino acids 3 to 178 (176 residues), 65.4 bits, see alignment E=7.7e-22 PF00672: HAMP" amino acids 208 to 259 (52 residues), 38.5 bits, see alignment 1.8e-13 PF00015: MCPsignal" amino acids 324 to 503 (180 residues), 119.1 bits, see alignment E=2.9e-38

Best Hits

KEGG orthology group: K13487, methyl-accepting chemotaxis protein WspA (inferred from 92% identity to pba:PSEBR_a1016)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (540 amino acids)

>PFR28_00351 hypothetical protein (Pseudomonas sp. RS175)
MKNWTLRQRILASFAVIIAIMLLMVVVSYSRLLKIQDSEEKVRADALPGVYYSSMIRGGW
VDSYVKTQQIVGLSGNREITAEDRAQYQGFEQHLREEIQNYQKLIEDPADQVSFDEFEVN
HQTFNQALAKALDLYQRKDYEGARQVVNKDLTAAWLDGRGHLNQIIERNRELAEQAADTI
GTAVMAAKIAMGLSLLVALVIALLCGLLLMRAIMAPMNRIVEILDVMRSGDLSGRLNLAR
KDEFGAVETGFNDMMAELTALVSQAQRSSVQVTTSVTEIAATSRQQQATATETAATTTEI
GATSREIAATSRDLVRTMTEVSTAADQASVAAGSGQQGLARMEETMHSVMGAADLVNAKL
AILNEKAGNINQVVTTIVKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEVRRLADQTA
VATYDIEQMVREIQSAVSAGVMGMDKFSEEVRRGMAEVQQVGEQLSQIIHQVQALAPRVL
MVNEGMQAQATGAEQINHALVQLGDASSQTVESLRQASSAIDELSQVAVGLRSGVSRFKV