Protein Info for PFLU_RS25730 in Pseudomonas fluorescens SBW25

Annotation: PAS domain S-box protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 982 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 46 to 65 (20 residues), see Phobius details amino acids 71 to 91 (21 residues), see Phobius details amino acids 112 to 134 (23 residues), see Phobius details amino acids 153 to 171 (19 residues), see Phobius details amino acids 183 to 207 (25 residues), see Phobius details amino acids 239 to 258 (20 residues), see Phobius details amino acids 272 to 296 (25 residues), see Phobius details amino acids 306 to 327 (22 residues), see Phobius details amino acids 331 to 353 (23 residues), see Phobius details amino acids 374 to 392 (19 residues), see Phobius details amino acids 398 to 420 (23 residues), see Phobius details amino acids 427 to 449 (23 residues), see Phobius details amino acids 469 to 491 (23 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 631 to 746 (116 residues), 37 bits, see alignment E=1.7e-13 PF00989: PAS" amino acids 633 to 678 (46 residues), 27.5 bits, see alignment 5.2e-10 PF00512: HisKA" amino acids 756 to 816 (61 residues), 36.9 bits, see alignment 6.3e-13 PF02518: HATPase_c" amino acids 863 to 973 (111 residues), 90.7 bits, see alignment E=1.7e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU5236)

Predicted SEED Role

"Two-component sensor CbrA: intrcellular carbon:nitrogen balance"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K243 at UniProt or InterPro

Protein Sequence (982 amino acids)

>PFLU_RS25730 PAS domain S-box protein (Pseudomonas fluorescens SBW25)
MSFSLTQMLLISAAYLAALFGVAWISERGMIPRAIIRHPLTYTLSLGVYASAWAFYGTVG
LAYQYGYGFLSSYLGVSGAFLLAPVLLYPILKITRTYQLSSLADLFAFRFRSTWAGALTT
IFMLIGVLPLLALQIQAVADSISILTREPVQHRVALAFCALITLFTIFFGSRHIATREKH
EGLVFAIAFESVIKLIAIGGVGLYALYGVFDGPQQLELWLLQNQTALAALHTPLQEGPWR
TLLLVFFASAIVMPHMYHMTFTENLNPRSLVSASWGLPLFLLLMSLAVPLILWAGLKLGA
TTNPEYFTLGIGIAANSPALALLAYVGGLSAASGLIIVTTLALSGMALNHLVLPLYQPPA
EGNIYRWLKWTRRALIVAIIMAGYGFYLLLGAGQDLANLGIVAFVATLQFLPGVLSVLYW
PTANRRGFIAGLLAGILVWIVTMLLPLVGNLQGFYIPLLNMIYVLDDTSWHMAAIASLAA
NVLMFTLISLFTNASPEETSAAEACAVDNVRRPQRRELHAASPQEFATQLAKPLGAKAAQ
KEVEQALRDLYLPFDERRPYALRRLRDRIEANLSGLMGPSVSQDMVETFLPYKAGGENYV
TEDIHFIESRLEDYHSRLTGLAAELDALRRYHRQTLQELPMGVCSLAKDQEILMWNKAME
ELTGIAAQRVVGSRLNTLGDPWKELLQGFINLPDEHLHKQHLALDGQTRWLNLHKAAIDE
PLAPGNSGLVLLVEDLTETQMLEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNL
REEREEDGEIIEISGQILEQTKRVSRIVQSLMSFAHAGGHQNQDEAVCLAEVAQDAIGLL
ALNRRNFEVQFFNLCDPDHWVDGDSQRLAQVLINLLSNARDATPAGGAVRVKTEVFEHTV
DLIVEDEGSGIPQNIMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADTE
SQRGTRIRVTLPRHVEATSAVN