Protein Info for PFLU_RS23015 in Pseudomonas fluorescens SBW25

Annotation: TetR/AcrR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 transmembrane" amino acids 158 to 173 (16 residues), see Phobius details PF00440: TetR_N" amino acids 18 to 63 (46 residues), 58 bits, see alignment 6.3e-20 PF13305: TetR_C_33" amino acids 87 to 194 (108 residues), 28.3 bits, see alignment E=2.3e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU4697)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K0M6 at UniProt or InterPro

Protein Sequence (217 amino acids)

>PFLU_RS23015 TetR/AcrR family transcriptional regulator (Pseudomonas fluorescens SBW25)
MHKEPRKVREFRRREQEILDTALKLFLEQGEDSVTVEMIADAVGIGKGTIYKHFKSKAEI
YLRLMLDYERDLNELLHSADVDKDKEALSRAYFEFRMRDPQRYRLFDRLEEKVVKGHQVP
EMVEELHKIRASNFERLTLLIKGRISEGKLEDVPPYFHYCAAWALVHGAVALYHSPFWSN
VLEDQEGFFQFLMDIGVRMGNKRKHSSEQPPLESPST