Protein Info for PFLU_RS21940 in Pseudomonas fluorescens SBW25

Annotation: DNA recombination protein RmuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 344 to 363 (20 residues), see Phobius details amino acids 376 to 396 (21 residues), see Phobius details PF02646: RmuC" amino acids 174 to 470 (297 residues), 358.3 bits, see alignment E=1.4e-111

Best Hits

Swiss-Prot: 79% identical to RMUC_PSEAE: DNA recombination protein RmuC homolog (rmuC) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K09760, DNA recombination protein RmuC (inferred from 100% identity to pfs:PFLU4472)

Predicted SEED Role

"DNA recombination protein RmuC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K0X8 at UniProt or InterPro

Protein Sequence (492 amino acids)

>PFLU_RS21940 DNA recombination protein RmuC (Pseudomonas fluorescens SBW25)
MAFDWTSIALGLAGAAVPLLALCWQLQRRLTARMTGWELLEERLAIAQLAQEGLAAQLDA
SRDEISDLSQANAAKQADLAAVRREVELLQIDRDNARDAAHAWNLDRSAKEAELRRLDAL
SSALRAELREQQDSHQQRLNDLQGSRDELRAQFAELAGKIFDEREQRFAETSQERLGQLL
DPLKERIQSFEKRVEESYQNEARERFSLAKELERLQQLNLRLSDEATNLTRALKGQKTQG
NWGELILERVLEHAGLEKGREYQTQVSLKGPDGERFQPDVLIMLPGDKQVVVDSKVSLTA
YQQYVAAEDDVIGQAALKQHVLSLRNHVKGLAGKDYKRLEGLHSLDFVLLFVPIEAAFSA
ALQAEPNLFQEAFDRHIVIVSPTTLLATLRVIDSLWKQERQSQNAREIAERAGWLYDKFV
LFIQDLDEVGNRLQQLDKAYSAARNKLTDGRGNLVSRTEQLRLLGARASKSLPADLLERA
MTDSDGVAHLPE