Protein Info for PFLU_RS15730 in Pseudomonas fluorescens SBW25

Annotation: ABC transporter ATP-binding protein/permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 567 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 63 to 87 (25 residues), see Phobius details amino acids 144 to 163 (20 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details amino acids 274 to 295 (22 residues), see Phobius details amino acids 305 to 322 (18 residues), see Phobius details PF06472: ABC_membrane_2" amino acids 23 to 292 (270 residues), 159.1 bits, see alignment E=2.3e-50 PF05992: SbmA_BacA" amino acids 31 to 342 (312 residues), 103.8 bits, see alignment E=1.9e-33 PF00005: ABC_tran" amino acids 377 to 509 (133 residues), 65.2 bits, see alignment E=1.5e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3228)

Predicted SEED Role

"ABC transporter ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KC58 at UniProt or InterPro

Protein Sequence (567 amino acids)

>PFLU_RS15730 ABC transporter ATP-binding protein/permease (Pseudomonas fluorescens SBW25)
MHTLRTFWRLARPFWTSEQKYPALLLLLATVAMNLCLVGVNILNNFWNLHFYNALQEKDY
PGFLLGGLQFILLQIGLAAFTVGAFHFQQKLTLLWRRWSTRNLLAQWLDSQRYQKLKLTE
TEVDNPDQRIAEDIDLFIIKSLKLSLGLLTAVVSLFSFLNILWQASGLVSIPWGDEGLVI
PGLLVWVALLYALLGTGFAFWLGRALPHLNFVQQRREADFRFSLMRLRENADSVAQYRGE
AVESQRFNQRLEAALQNFWVLVKKQKLIMGYSTFYLRSATVIPMFIMAPQFFAGAFPLGR
LTQISAAFGEVHAAVAYLVGVFPELAEWKSVVDRLDGFQNRLDNVKVDSDVVLTQRSDGL
HIRNLAIWLPDGRRLFEGFNLTLKPGDSLLIKAPSGYGKSTLIRAVTGLWHHASGSVAYD
RDRALTLSQKTYLPLGSLRETLWYPLPAPEEQDAVLQQIMRQVGLEHLDTQLAQERDWAQ
TLSLGEQQRCAFVRALLARPAVLFLDESSAAMDAANEARCYQLLKDMLPDTILISVGHHA
SLERFHGQVLELQDEVEWVHRAVSRTV