Protein Info for PFLU_RS15430 in Pseudomonas fluorescens SBW25

Annotation: TVP38/TMEM64 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 212 transmembrane" amino acids 21 to 52 (32 residues), see Phobius details amino acids 56 to 80 (25 residues), see Phobius details amino acids 106 to 125 (20 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details PF09335: SNARE_assoc" amino acids 39 to 157 (119 residues), 87.5 bits, see alignment E=5e-29

Best Hits

Swiss-Prot: 32% identical to Y305_SYNY3: TVP38/TMEM64 family membrane protein slr0305 (slr0305) from Synechocystis sp. (strain PCC 6803 / Kazusa)

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU3165)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KBQ6 at UniProt or InterPro

Protein Sequence (212 amino acids)

>PFLU_RS15430 TVP38/TMEM64 family protein (Pseudomonas fluorescens SBW25)
MIDLAVHNIAQWLEIIRSLNVVGIALYAAIFVVGTVAFVPASMLTALAGFLYGPMWGTLL
ISPAGLLAAAVAFALGRSLLRPWVKRRLANSPTSAAVDHAIESGGFRIVFLLRLASIVPF
APLSYGLGASRIARRDFLLATWIGLLPGTFLYAYLGSLAADVAQIISGEVTTNRSTQMMT
WTGLVVALIALLTVARYARKAINQALLQPSSN