Protein Info for PFLU_RS11240 in Pseudomonas fluorescens SBW25

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 transmembrane" amino acids 24 to 42 (19 residues), see Phobius details amino acids 57 to 76 (20 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 148 to 171 (24 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 292 to 309 (18 residues), see Phobius details amino acids 317 to 333 (17 residues), see Phobius details amino acids 339 to 360 (22 residues), see Phobius details amino acids 371 to 394 (24 residues), see Phobius details amino acids 406 to 425 (20 residues), see Phobius details PF07690: MFS_1" amino acids 30 to 391 (362 residues), 164.3 bits, see alignment E=1.9e-52

Best Hits

Swiss-Prot: 36% identical to RHMT_ECOLI: Inner membrane transport protein RhmT (rhmT) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2288)

Predicted SEED Role

"D-galactarate permease" in subsystem D-galactarate, D-glucarate and D-glycerate catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K560 at UniProt or InterPro

Protein Sequence (455 amino acids)

>PFLU_RS11240 MFS transporter (Pseudomonas fluorescens SBW25)
MDTLQNPPDPSVLARAAAKVKRHVLPLFVVMFIVNYIDRVNIGFVRSHLETDLGIGAAAY
GLGAGLFFIGYAIFEVPSNLLLQRYGARAWLTRIMFTWGAAAMAMAFVKGETSFYILRFV
LGAAEAGFFPGIIYYFTQWLPAAERGKAMAIFLSGSAIASVISGPVSGALLHVNGLSLHG
WQWMFLIEGFASILLCGFVWFWLQSHPHQAKWLSDEEKQALVSAIDLEQQAREASQVTRP
SMFKLLADKQIALFCFIYFSIALTIYGATFWLPSMIKKMGDLGDFQVGLFNSIPWLISIV
AMYAFAALASKWKHQQAWVALMLVIAAFGMFMSTTGGPVFAFIAICFAAIGFKAASALFW
PIPQGYLDARIAAAVIALINSVGNLGGFVAPTTFGLLEQTTGSIEGGLYGLAATSLVAAV
VVFFARTAPRGAVPPTSTPTTHPHALRPGPQGAAS