Protein Info for PFLU_RS10350 in Pseudomonas fluorescens SBW25

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 transmembrane" amino acids 22 to 40 (19 residues), see Phobius details amino acids 52 to 74 (23 residues), see Phobius details amino acids 82 to 103 (22 residues), see Phobius details amino acids 108 to 131 (24 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 207 to 227 (21 residues), see Phobius details amino acids 243 to 263 (21 residues), see Phobius details amino acids 275 to 293 (19 residues), see Phobius details amino acids 300 to 320 (21 residues), see Phobius details amino acids 332 to 354 (23 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 218 (197 residues), 44.1 bits, see alignment E=6.7e-16 amino acids 217 to 376 (160 residues), 36.5 bits, see alignment E=1.4e-13

Best Hits

Swiss-Prot: 54% identical to Y1221_YERPE: Uncharacterized MFS-type transporter YPO1221/y2967/YP_0917 (YPO1221) from Yersinia pestis

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2102)

Predicted SEED Role

"Membrane protein mosC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K5S0 at UniProt or InterPro

Protein Sequence (383 amino acids)

>PFLU_RS10350 MFS transporter (Pseudomonas fluorescens SBW25)
MTAISTSAPVVPGRLEQMSTRIAFFIAGFGIAAWAPLVPYAKARAELSEGTLGLLLLCLG
VGSIIAMPAAGALASRFGCRRVLSAGTIMICLALPVLATVSSIPLLMAGLFLFGAGLGTV
DSTVNLQAVIVERASGKTMMSGFHGLFSLGGIIGAAGVSGLLGLGLSPLQATLVVIVITL
AALLKAAPHLLPYGSESSGPAFAVPRGVVLFIGCLCFIVFLAEGAVLDWSAVFLSAERGL
DEAYAGLGYAAFALTMTLGRLTGDAIVRRLGATRVIVAGGALAAVGTFLATLSPAWEMAL
LGYALVGAGCSNIVPVLYTAVGKQNVMPEHIAVPAITTLGYAGILAGPALIGFIAHGSSL
ATAFLLIAGLLAAVAVSGKILRV