Protein Info for PFLU_RS04145 in Pseudomonas fluorescens SBW25

Annotation: ABC transporter ATP-binding protein/permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 574 transmembrane" amino acids 39 to 59 (21 residues), see Phobius details amino acids 81 to 101 (21 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 186 to 186 (1 residues), see Phobius details amino acids 191 to 212 (22 residues), see Phobius details amino acids 278 to 302 (25 residues), see Phobius details PF06472: ABC_membrane_2" amino acids 34 to 302 (269 residues), 199 bits, see alignment E=1.5e-62 PF05992: SbmA_BacA" amino acids 43 to 351 (309 residues), 133.2 bits, see alignment E=2.3e-42 PF00005: ABC_tran" amino acids 387 to 521 (135 residues), 59.4 bits, see alignment E=9.5e-20

Best Hits

KEGG orthology group: K02471, putative ATP-binding cassette transporter (inferred from 100% identity to pfs:PFLU0831)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K5X3 at UniProt or InterPro

Protein Sequence (574 amino acids)

>PFLU_RS04145 ABC transporter ATP-binding protein/permease (Pseudomonas fluorescens SBW25)
MNPNAEYSAVNDAVRGQFFRRTWAMITPYWRSEEKGKAWLLLAAVIGLSLFSVAISVWLN
HWYKDFYNALEKKDTAAFWQQIGYFCAIAAVAILGAVYRLYLTQMLTIRWRAWLTEKHFA
RWLGNKNYYQLEQGGYTDNPDQRISEDLNSFTSNTLSLGLGLLRNVVSLVSFSVILWGVS
GSIDVFGITIPGYMFWCALVYAGVGSWLTHLIGRRLIGLSNQQQRFEADLRFSMVRVREN
AESIALYNGEANENQRLSTRFGKVWHNFWDIMKVSKRLTFFTAGYEQIAIVFAFVVAAPR
YFAGKIELGELMQINSAFGNVQGNFSWFISAYADLAGWRATSDRLLSFQQAMDENEQRPA
AIEVHAEGERLVVQGLGMNLADGRHLLTDANMIVEPGQRVMLSGRSGSGKSTLLRAMGHL
WPAGHGSIRLPAKRYLFLPQKPYLPIGTLKAVLSYPQDDSVYSAELYAQVLETCRLPHLV
GRLDEANHWQRMLSPGEQQRLAFARALLFAPQWLYMDEATSAMDEEDEATLYQALIDELP
GLSIVSVGHRSSLKRFHGRHVRIEGGWLQEQPLA