Protein Info for OLJFJH_06705 in Erwinia amylovora T8

Annotation: Clp protease ClpE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF00345: PapD_N" amino acids 36 to 150 (115 residues), 100 bits, see alignment E=5.1e-33

Best Hits

Swiss-Prot: 76% identical to FAEE_ECOLX: Chaperone protein FaeE (faeE) from Escherichia coli

KEGG orthology group: None (inferred from 99% identity to eay:EAM_0233)

Predicted SEED Role

"Putative fimbrial chaperone protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (256 amino acids)

>OLJFJH_06705 Clp protease ClpE (Erwinia amylovora T8)
VNKVGTVKQLFGNKRIKALGLTLALALTIQSPQASLATDQTRYIFRGDKDSLSITVTNND
RQRTFGGQAWLDNIVEKDTRPTFVATPSFFKVKPNGQQSLRIIMASDHLPQDKESVYWLN
LQDIPPALGGSGIAIALRTKLKLFYRPKALLEGRKGAEEGISLRPQSGGKTILVNTTPYI
YAIGSLQDKSGKTLDVSNDTAQKLLMFMPGDEVAVSGNVVKVDSLNDYGERQSWTINQKQ
PVNAVGPTEEKPAGGT