Protein Info for OKGIIK_16615 in Rhodanobacter sp. FW510-T8

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 transmembrane" amino acids 25 to 49 (25 residues), see Phobius details amino acids 61 to 86 (26 residues), see Phobius details amino acids 106 to 134 (29 residues), see Phobius details amino acids 142 to 166 (25 residues), see Phobius details amino acids 173 to 194 (22 residues), see Phobius details amino acids 230 to 251 (22 residues), see Phobius details PF01061: ABC2_membrane" amino acids 11 to 220 (210 residues), 123.6 bits, see alignment E=8.5e-40 PF12698: ABC2_membrane_3" amino acids 61 to 247 (187 residues), 36.9 bits, see alignment E=2.4e-13

Best Hits

Swiss-Prot: 59% identical to YADH_ECOL6: Inner membrane transport permease YadH (yadH) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K09686, antibiotic transport system permease protein (inferred from 74% identity to xcc:XCC3978)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (259 amino acids)

>OKGIIK_16615 ABC transporter permease (Rhodanobacter sp. FW510-T8)
MSNAAANLVALNTIVRREIVRIMRIWTQTLIPPAITMTLYFVIFGKLIGSRIGSIQGGFT
YMQYIVPGLVMMSIITNSYGNISSSFFGAKFSRAVEEMLVSPMPNWVILAGYVAGAVVRG
LVVGLLVLVIALFFTDLHVMHPLITFASVLLGATIFSLAGFVNAVYAKKFDDIALVPTFI
LTPLTYLGGVFYSINMVGEPWQAISRANPILYMVNAFRYGVLGISDVHVGWAFVVMLGFV
AALSVVALQLLKRGVGLRS