Protein Info for OKGIIK_14320 in Rhodanobacter sp. FW510-T8

Name: acrB
Annotation: acriflavin resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1055 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details amino acids 31 to 36 (6 residues), see Phobius details transmembrane" amino acids 30 to 30 (1 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 387 to 411 (25 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 463 to 490 (28 residues), see Phobius details amino acids 536 to 557 (22 residues), see Phobius details amino acids 870 to 889 (20 residues), see Phobius details amino acids 896 to 916 (21 residues), see Phobius details amino acids 920 to 943 (24 residues), see Phobius details amino acids 972 to 993 (22 residues), see Phobius details amino acids 1000 to 1025 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 7 to 1024 (1018 residues), 918.1 bits, see alignment E=9.6e-280 PF03176: MMPL" amino acids 295 to 492 (198 residues), 38.1 bits, see alignment E=1.4e-13

Best Hits

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1055 amino acids)

>OKGIIK_14320 acriflavin resistance protein (Rhodanobacter sp. FW510-T8)
MNIFAPLIRRPVGTSLLALGLILAGLWAYLLLGVAALPSLDFPGVYVAANQPGASAQTMA
NTILAPLERHLGRIPGVDEMYGNASEGSASVMVRFTMSRTADSAARDVQAAINAAAVDLP
SGMPTPPQYFKFDTSQIPILFLTLTSTGLPQDQLFDLADTMLKPAVAQIGGVAQVQVFGG
TPHSVRIELDNNALAAKGLTTNDVANALRAANVTSPQGTLSNGRTQMTVSASDGLQTPAE
FARLLISVKNGTPVRLSDVARVYGGQQDEYQAAWFNGARTVGLQISKRPEANAVATVEAI
RARLPQLGASLPSNVTMSAVFDLTQTTKSALHEVQVALLISIAMVVLVMLVFLRRLRPTL
IATLSVPLSLAGAFVVMWALGYTLNTLSLVALVLCIGFVVDDAIVVIENIVRHMERGEPP
MQAALTGVREIGFTVISITLSLVAVFAPLLFGNNMLVMLLREFSVTLAAAVVISALVSLT
LTPALCAYLLEHEPAIRKPPGRLERAVENFDRRLLRIYERALDWAMHHRRIMRWQPLTLL
LLTFALGFAVAKTAGGTFMPQEDTGQLQVDIRADANISPDRLAERVQHVAALMQADPTVL
DLLTMLGRNGGGDGAVGNAAQMFVDLKPRGSGPEQRHENIKQVIERLSKQFDRLPDVKVS
VSPVQFLGGGGSGDGGGQYEFQLVSSNGGDLQPWTLKMVRQMRTIKQFRDVSSGFDQVGK
QQLLKIDREAAGRLHVGIGTIDSALYNAFGQRQVSQIYSDINQYAVVLSTGAAQSVSAES
LLNVRVRNEQGRMIPLSALAKIEPNISPLRVRHHNQLEAATISYNLAKDVPQDLGVKLVE
QAAYAVGLPAGMRVDFTGANQRLKQAQSNGMVLLLGSILAMYIVLGILYESLGHPLTILS
TLPAAGAGAFLAMLVTQTQISMMAIIAILMLIGIVKKNAILMVDFALVAERERGLPAPEA
IREAALVRFRPITMTTLVAMGAALPLAIGFGIGSEMRQPLGIAIVGGLLVSQLLTLLSTP
AIYLWNHDRKIRKAARKERRAEKKRLKALGKPQTA