Protein Info for OKGIIK_13690 in Rhodanobacter sp. FW510-T8

Annotation: Permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 38 to 58 (21 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details amino acids 96 to 116 (21 residues), see Phobius details amino acids 125 to 142 (18 residues), see Phobius details amino acids 148 to 167 (20 residues), see Phobius details amino acids 179 to 201 (23 residues), see Phobius details amino acids 208 to 231 (24 residues), see Phobius details amino acids 242 to 262 (21 residues), see Phobius details amino acids 269 to 289 (21 residues), see Phobius details PF00892: EamA" amino acids 8 to 139 (132 residues), 87.3 bits, see alignment E=5.3e-29 amino acids 152 to 285 (134 residues), 79.7 bits, see alignment E=1.2e-26

Best Hits

Swiss-Prot: 48% identical to YIJE_ECOL6: Probable cystine transporter YijE (yijE) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 50% identity to axy:AXYL_01581)

MetaCyc: 48% identical to cystine exporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-267

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (298 amino acids)

>OKGIIK_13690 Permease (Rhodanobacter sp. FW510-T8)
MSPSPSRGALLALLATILIWAYSWVVMKQVLAYAGPFHFAALRYLLGAAVLFAALLLTRQ
SLRPPPLGPTLLIGLCQTAAFQGLEQWALLGGGAGHVALLAYTMPFWAVLLAWLLLGDRP
TQRHWLGLALAAFGLVCIIEPWHDMGSVLSTTLAIAGGVAWAAGTVLSKRLFHRHAPSVL
SLTAWQMLLGGIALGGAALAVPERAIEWNWIFIGGLTYSVLLASSLAWWLWSIVLQRLPT
TVASVSSLGVPIVSVLLAWLILHERPSPMEGLGIVFVLLGLAAVSGVGARRRSRAGSG