Protein Info for OKGIIK_11305 in Rhodanobacter sp. FW510-T8

Name: salY
Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 435 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 312 to 331 (20 residues), see Phobius details amino acids 353 to 381 (29 residues), see Phobius details amino acids 400 to 421 (22 residues), see Phobius details PF12704: MacB_PCD" amino acids 20 to 266 (247 residues), 80.1 bits, see alignment E=2.9e-26 PF02687: FtsX" amino acids 313 to 426 (114 residues), 69.7 bits, see alignment E=2.2e-23

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 59% identity to psu:Psesu_2491)

Predicted SEED Role

"ABC transporter ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (435 amino acids)

>OKGIIK_11305 ABC transporter ATP-binding protein (Rhodanobacter sp. FW510-T8)
MFTYYLDLALRSLKRNKALTALMVLAIALGIGASMTTLTVLHVLSGDPLPGKSAQLYYPQ
VDPQDIKGMQPNKEPPDQVTLIDGLNLLRAGRADHQALMSGGSVPLQPERSSLDPFYVEA
RYTSADFFAMFDAPFLYGHGWTAADGEAKAREVVIAKSLNDKLFGGADSVGRTLRMAGTS
FRIVGVLDSWQPNPHFYDLNTGSYAYGEQVFLPLQTMLELRLDRNGSSDCWGNGGGGVGN
ILPSDTCVWLQFWVQLDSPVKAAAYEEFLVHYSQEQKALGRFQRAPNVRLRNVVQWLDYQ
RVVPNDVRLQTGLAFGFLLVCLVNTVGLMLAKFMRRSAELGVRRALGASRRALFAQLLIE
SGVIGLVGGIGGLLLAMFGLWLVRQRPSDYAALAHLDPSMLLATFVLAVCATLLAGLLPA
WRACQIAPALQLKSN