Protein Info for OKGIIK_06435 in Rhodanobacter sp. FW510-T8
Name: scpA
Annotation: Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 67% identical to SCPA_XYLFT: Segregation and condensation protein A (scpA) from Xylella fastidiosa (strain Temecula1 / ATCC 700964)
KEGG orthology group: K05896, segregation and condensation protein A (inferred from 70% identity to psu:Psesu_1279)Predicted SEED Role
"Segregation and condensation protein A" in subsystem Two cell division clusters relating to chromosome partitioning
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (310 amino acids)
>OKGIIK_06435 Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family (Rhodanobacter sp. FW510-T8) MSTEPVEPQSPDAVAQDAFASVPQQQEMPLAIVRGQPMLQMPQDLYIPPDALEVILEAFE GPLDLLLYLIRRQNLDILDIPVAEITRQYMAYIELMQDVMRLELAAEYLLMAAILAEIKS RLLLPRPPAEEGLEDDPRAELVRRLQEYERFKRAAEDIEALPRQERDSVVVHADVGERNV IKLPPPLDLPELLLALKDVMHRAELFGHHAIKREALSVRQRMGELLSRLDDSSFHRFESL FDVSEGRLGIVVTFLAMLELAKEMLVEIVQEEPLAPIYVKAKATASGHAAEEPADDASTG ESALVESSGE