Protein Info for OKGIIK_01950 in Rhodanobacter sp. FW510-T8

Name: tadA
Annotation: nucleoside deaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 PF00383: dCMP_cyt_deam_1" amino acids 26 to 131 (106 residues), 47.9 bits, see alignment E=1.1e-16 PF14437: MafB19-deam" amino acids 55 to 136 (82 residues), 32.5 bits, see alignment E=7.1e-12

Best Hits

KEGG orthology group: None (inferred from 65% identity to psu:Psesu_2410)

Predicted SEED Role

"cytidine and deoxycytidylate deaminase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (186 amino acids)

>OKGIIK_01950 nucleoside deaminase (Rhodanobacter sp. FW510-T8)
MLPLQIHLTLPPWIGDVADTNRRYQSDEERVGLAIELSRHNVERGGGGPFGAAVFNSHSG
RLVAVGVNRVLPQSCSVAHAEMMVIMIAQQRLSRHRLNEDGGHYVLATSSQPCCQCYGAT
VWAGIDELLIGARSEDVEELTEFDEGPLPADWIGELARRNIAVRRDILRARAREVLATYG
ATGVPY