Protein Info for OKGIIK_01720 in Rhodanobacter sp. FW510-T8

Annotation: Peptide ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 signal peptide" amino acids 19 to 20 (2 residues), see Phobius details amino acids 42 to 44 (3 residues), see Phobius details transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 315 to 337 (23 residues), see Phobius details amino acids 363 to 387 (25 residues), see Phobius details amino acids 406 to 425 (20 residues), see Phobius details PF12704: MacB_PCD" amino acids 20 to 218 (199 residues), 58.9 bits, see alignment E=8.9e-20 PF02687: FtsX" amino acids 318 to 435 (118 residues), 63.7 bits, see alignment E=1.7e-21

Best Hits

Predicted SEED Role

"ABC transporter ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (443 amino acids)

>OKGIIK_01720 Peptide ABC transporter permease (Rhodanobacter sp. FW510-T8)
MFAYYLDLALRSFRRSKALTALVVVLMGCGVATCMVAFAVFRAAAADPIPWKSNQLFVPQ
IDNFGPVHNWKGQPPILLSYNDAEALLHARQARRQVLIYGSKWTVLPDDARQQPFPQEGD
AVSSDFFAMFDARFRYGGGWSANDDDQRAAVAVISSALNRKLFGGDDSVGREINLDAHVY
RIVGVLDDWDPRPRFFDVTSTFDAFGHPRQIYLPFSRAIDLQKAASGQFYCSTNTVDPHL
PDWSSILHSECAWIVAWVELPTRADVAHYHDWLRNYAAEQRRLGRLDWPPNVRLSNVMQW
LHQDGFNVIPKSSALSLIVSVSFLLICLVNVVGLMLARFMRRAPEIGVRRALGASRGAIY
RQFLVEAAAIGLAGGVLGVLLTALGMAGIGKVFEPEIARLARLDASLFLLAVLVAVAATL
IAALYPTWRAAQVQPAWQLKSNG