Protein Info for OKGIIK_00315 in Rhodanobacter sp. FW510-T8

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 21 to 45 (25 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 105 to 124 (20 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 163 to 186 (24 residues), see Phobius details amino acids 196 to 214 (19 residues), see Phobius details amino acids 282 to 306 (25 residues), see Phobius details amino acids 318 to 337 (20 residues), see Phobius details amino acids 344 to 362 (19 residues), see Phobius details amino acids 368 to 387 (20 residues), see Phobius details amino acids 406 to 426 (21 residues), see Phobius details amino acids 432 to 453 (22 residues), see Phobius details PF00083: Sugar_tr" amino acids 26 to 465 (440 residues), 137.5 bits, see alignment E=6.6e-44 PF07690: MFS_1" amino acids 31 to 360 (330 residues), 92.1 bits, see alignment E=3.6e-30 amino acids 324 to 452 (129 residues), 42.3 bits, see alignment E=4.8e-15

Best Hits

KEGG orthology group: K08369, MFS transporter, putative metabolite:H+ symporter (inferred from 70% identity to acr:Acry_1412)

Predicted SEED Role

"benzoate MFS transporter BenK" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (466 amino acids)

>OKGIIK_00315 MFS transporter (Rhodanobacter sp. FW510-T8)
VSEIESARIAARLDRLPPSRTVWTIVILISLGGVFEFYDLFFTGYVAPGMIKSGLFTPQS
LGFLAALDSIKVAGFGTFVFSTFAGLWFGVVLLGHLPDRFGRRPVFTWSLIWYVACTAIM
AFQQTGEMLNIWRFIAGIGFAVQLITIDTYISELIPGPERGRAFSINQFITFCVVPIVAL
LAWLLVPLSPLALDGWRWVVLIGSIGAGVVWLLVRKIPESPRWLALKGRVDEAEAVVAMI
ERKVRAETGQDLPAPRQESTEEKGRGRFLEIFSATYRKRTLMLSVFNMAQVVGFYGFAAW
VPTLLIARGITLTHSLEYSFIIAIANPFGPLLGTLFADRIERKLQIILGLVVMGLAMLAF
SQVSDPPALIALGVLFTLAANVMSYAYHSYQAELYPTRIRARAIGFVYSWSRIAAAFAGL
AIGYFLNEGGVLAVAVFIAIAMVTGIAVIGLFGPTTKGMALERINH