Protein Info for OKFHMN_26870 in Escherichia coli ECRC101

Name: ynjC
Annotation: Inner membrane ABC transporter permease protein YnjC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 511 transmembrane" amino acids 7 to 33 (27 residues), see Phobius details amino acids 53 to 80 (28 residues), see Phobius details amino acids 92 to 112 (21 residues), see Phobius details amino acids 132 to 155 (24 residues), see Phobius details amino acids 178 to 202 (25 residues), see Phobius details amino acids 239 to 260 (22 residues), see Phobius details amino acids 280 to 304 (25 residues), see Phobius details amino acids 316 to 337 (22 residues), see Phobius details amino acids 346 to 370 (25 residues), see Phobius details amino acids 376 to 396 (21 residues), see Phobius details amino acids 429 to 450 (22 residues), see Phobius details amino acids 477 to 503 (27 residues), see Phobius details PF00528: BPD_transp_1" amino acids 346 to 503 (158 residues), 31.2 bits, see alignment E=9e-12

Best Hits

Swiss-Prot: 96% identical to YNJC_ECOLI: Inner membrane ABC transporter permease protein YnjC (ynjC) from Escherichia coli (strain K12)

KEGG orthology group: K05778, putative thiamine transport system permease protein (inferred from 100% identity to eok:G2583_2201)

Predicted SEED Role

"ABC transporter, permease protein YnjC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (511 amino acids)

>OKFHMN_26870 Inner membrane ABC transporter permease protein YnjC (Escherichia coli ECRC101)
MATPLRYALIFLLWAMVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVS
TTIAAVGALLIALLVIVALWPGPKWQRMCTRLPWLLAIPHVAFATSALLLFADGGLLYDY
FPYFTPPMDKLGIGLGFTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLGYSRWQCLNW
LLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGAL
ASLLLMLLLAAYVLLGYLLWCTWRRTIPRVDGVRKPATPLLPGITLASFLPLTSVLCVVL
LAILADQSTINSEALINSLTMGLVATFIALLLLLLWLEWGPQRRQLWLWLPILLPALPLV
AGQYTLALWLNMDGSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKI
FFYVKCPLMLRPTLIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAA
LALWQLLLPLIIFALTALVAKWVGYVRQGLR