Protein Info for OKFHMN_13550 in Escherichia coli ECRC100

Name: araJ
Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 20 to 46 (27 residues), see Phobius details amino acids 58 to 83 (26 residues), see Phobius details amino acids 93 to 113 (21 residues), see Phobius details amino acids 124 to 147 (24 residues), see Phobius details amino acids 164 to 186 (23 residues), see Phobius details amino acids 199 to 219 (21 residues), see Phobius details amino acids 251 to 273 (23 residues), see Phobius details amino acids 286 to 308 (23 residues), see Phobius details amino acids 317 to 337 (21 residues), see Phobius details amino acids 343 to 367 (25 residues), see Phobius details amino acids 378 to 399 (22 residues), see Phobius details amino acids 411 to 430 (20 residues), see Phobius details PF00083: Sugar_tr" amino acids 21 to 221 (201 residues), 79.4 bits, see alignment E=2.8e-26 amino acids 241 to 388 (148 residues), 43.7 bits, see alignment E=1.8e-15 PF07690: MFS_1" amino acids 26 to 387 (362 residues), 100.2 bits, see alignment E=1.2e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to ecf:ECH74115_5425)

Predicted SEED Role

"Citrate-proton symporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (438 amino acids)

>OKFHMN_13550 MFS transporter (Escherichia coli ECRC100)
MTAIVNETVSVKKKPSGRRVIFASAFGNALEFFDFGVYNFFVVYISTLFFPPSADKNVAL
LLAFATFGVSFFMRPLGGIIVGAWADRFGRKPAMVFTIALMSLGTLMIGIAPTYETAGYW
GTATLVLARLIQGVAAGGEVGASMSLLVESAPANRRGFYSSWSLATQGLATTFGGVVALG
LSAWLPFATGSETVMAEWGWRVPFFIGVLLAPVGCWLRLSLENDVPEPAHNKKAAASESA
FSLLMQHKATIANGILLAIGSTVATYISLFYYGTWAAKYLGMNQNYSHAAMLLAGVITFV
GALLVGMLCDSVGRKKLILISRVMVLICSWPSFWLLVNYPSPGMLLTVVFVMVSFTTLGG
VPVMLLISELLPKRIRALGFALVYSIGVAIFGGFAQYFATQSIVLLDSLTAPAWYLGGGT
LLSMLALLYVKEPAKELQ