Protein Info for OKFHMN_12715 in Escherichia coli ECRC100

Annotation: ribose ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 324 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 54 to 73 (20 residues), see Phobius details amino acids 75 to 100 (26 residues), see Phobius details amino acids 102 to 130 (29 residues), see Phobius details amino acids 168 to 187 (20 residues), see Phobius details amino acids 213 to 234 (22 residues), see Phobius details amino acids 254 to 283 (30 residues), see Phobius details amino acids 294 to 313 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 46 to 311 (266 residues), 141.3 bits, see alignment E=1.7e-45

Best Hits

Swiss-Prot: 44% identical to RBSC_BACSU: Ribose import permease protein RbsC (rbsC) from Bacillus subtilis (strain 168)

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 100% identity to ecf:ECH74115_5600)

MetaCyc: 41% identical to putative erythritol ABC transporter membrane protein (Brucella abortus 2308)
7.5.2.-

Predicted SEED Role

"ABC transport system, permease protein Z5690"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (324 amino acids)

>OKFHMN_12715 ribose ABC transporter permease (Escherichia coli ECRC100)
MTTSAKTSAKKMLMSDLMQTVGILPILILIVAVFGFITPNFFTESNLLNITRQASINIVL
AAGMTFIILTGGIDLSVGSILGTTAVAAMVVSLSPEFAMLSIPAALMLGLLLGLFNGALV
AFAGLPPFIVTLGTYTALRGAAYLLADGTTVINSNINFEWIGNNYLGPVPWLVVIALAVI
VVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWLVLLFVYGMSGLLSGLGGIMSASRLY
SANGNLGMGYELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQL
VIKGAMIIIAVLIDKYRTRHHQSA