Protein Info for OKFHMN_02100 in Escherichia coli ECRC100

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 PF10554: Phage_ASH" amino acids 14 to 108 (95 residues), 56.3 bits, see alignment E=3.9e-19 TIGR02681: phage regulatory protein, Rha family" amino acids 108 to 209 (102 residues), 112.4 bits, see alignment E=5.5e-37 PF09669: Phage_pRha" amino acids 119 to 203 (85 residues), 106.1 bits, see alignment E=1.1e-34

Best Hits

KEGG orthology group: None (inferred from 84% identity to sfl:SF0880)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (282 amino acids)

>OKFHMN_02100 transcriptional regulator (Escherichia coli ECRC100)
MLDVAIENQNGWNYSAPAPHKTGAGICTPMITRAHNRAKAVFLCVKRSHIQIMVGRMGPF
SGGPDSLVTGSANPVRLTTHEICTSGGEFTNLSLEAAIMATIPTLSHPDVTIENGRAVTT
SVAVAEFFRKLHKNVIQKIEALECSSEFTELNFKPSEYTDSTGRKLPMYQITKNGFVFLV
MGFTGKKAAAFKEAYIAEFDRMEAELRQNNTTPTNKIIPGDGRTLVVRFDKFGNVEFTET
VPDGALVCTLDTFRLYLEKQGWTLVNRSAIKNMTVEQLLSIK