Protein Info for OHPLBJKB_01960 in Escherichia coli HS(pFamp)R (ATCC 700891)
Annotation: putative sugar kinase YdjH
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 99% identical to YDJH_ECOLI: Uncharacterized sugar kinase YdjH (ydjH) from Escherichia coli (strain K12)
KEGG orthology group: None (inferred from 100% identity to ecx:EcHS_A1856)MetaCyc: 99% identical to L-glycero-L-galacto-octuluronate kinase (Escherichia coli K-12 substr. MG1655)
2.7.2.-
Predicted SEED Role
"Uncharacterized sugar kinase YdjH"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (315 amino acids)
>OHPLBJKB_01960 putative sugar kinase YdjH (Escherichia coli HS(pFamp)R (ATCC 700891)) MDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAINEATIISRLGHRTAL MSRIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWK LNIDDVDFSRFSQAKLLSLASIFNSPLLDGKALTEIFTQAKARQMIICADMIKPRLNETL DDICEALSYVDYLFPNYAEAKLLTGKETLDEIADCFLACGVKTVVIKTGKDGSFIKRGDM TMMVPAVAGITAIDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGV KNRKLVEQLLEEYEG