Protein Info for OH686_20960 in Pseudomonas sp. S08-1

Annotation: Protein of unknown function UPF0060

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 110 signal peptide" amino acids 1 to 6 (6 residues), see Phobius details transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 30 to 48 (19 residues), see Phobius details amino acids 60 to 78 (19 residues), see Phobius details amino acids 85 to 106 (22 residues), see Phobius details PF02694: UPF0060" amino acids 4 to 106 (103 residues), 105.5 bits, see alignment E=8.9e-35

Best Hits

Swiss-Prot: 75% identical to Y1628_PSESM: UPF0060 membrane protein PSPTO_1628 (PSPTO_1628) from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)

KEGG orthology group: K09771, hypothetical protein (inferred from 81% identity to pmk:MDS_1281)

Predicted SEED Role

"Protein of unknown function UPF0060"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (110 amino acids)

>OH686_20960 Protein of unknown function UPF0060 (Pseudomonas sp. S08-1)
MLNYLWFFLAALFEIGGCYAFWMWLRLGKSAWWIAPGLLSLSLFALLLTRVEAAYAGRAY
AAYGGVYVVASLLWLGAIERTRPLLSDWLGALLCLIGAGVILLGPRFTSQ