Protein Info for OH686_20565 in Pseudomonas sp. S08-1

Annotation: Nitrite transporter from formate/nitrite family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 transmembrane" amino acids 29 to 51 (23 residues), see Phobius details amino acids 61 to 86 (26 residues), see Phobius details amino acids 105 to 130 (26 residues), see Phobius details amino acids 159 to 184 (26 residues), see Phobius details amino acids 196 to 221 (26 residues), see Phobius details amino acids 240 to 259 (20 residues), see Phobius details PF01226: Form_Nir_trans" amino acids 8 to 257 (250 residues), 218.8 bits, see alignment E=3.6e-69

Best Hits

KEGG orthology group: None (inferred from 90% identity to pfv:Psefu_0537)

Predicted SEED Role

"Nitrite transporter from formate/nitrite family" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (270 amino acids)

>OH686_20565 Nitrite transporter from formate/nitrite family (Pseudomonas sp. S08-1)
MSYLVPAEFATKMVDAGESKIYMSTRDTLIRAFMAGAILALAAVFAVSISVQTGSPLLGA
VLFPVGFVMLYLMGFDLLTGVFVLTPLALLDKRPGVTVGGVLKNWGLVFTGNFAGALTVA
FMMAFVFTYGFSTTPGVIGEKISHIGEARTLGYAEYGVAGWLTIFLRGMLCNWMVSMGVV
GAMISTTVSGKTIAMWMPIMLFFYMGFEHSVVNMFLFPSAMIMGGDFSVMDYMLWNEIPT
ALGNLVGGLAFTGLTLYATHVKTAPKRSFV