Protein Info for OH686_17655 in Pseudomonas sp. S08-1

Annotation: Organic hydroperoxide resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 TIGR03561: peroxiredoxin, Ohr subfamily" amino acids 7 to 139 (133 residues), 186 bits, see alignment E=1.8e-59 PF02566: OsmC" amino acids 43 to 137 (95 residues), 56.8 bits, see alignment E=1.3e-19

Best Hits

Swiss-Prot: 69% identical to OHR_XANCH: Organic hydroperoxide resistance protein (ohr) from Xanthomonas campestris pv. phaseoli

KEGG orthology group: None (inferred from 90% identity to pap:PSPA7_2305)

Predicted SEED Role

"Organic hydroperoxide resistance protein" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (141 amino acids)

>OH686_17655 Organic hydroperoxide resistance protein (Pseudomonas sp. S08-1)
MQTIKALYTATVTATGGRDGRAVSSDGFLDVKLTTPRELGGQGGEATNPEQLFAAGYSAC
FIGALKFVASQKKQAFPADASITGKVGIGQIPGGFGLEVELTISLPGIERAVAEELVAAA
HQVCPYSNATRGNIDVRLIVA