Protein Info for OH686_17540 in Pseudomonas sp. S08-1

Annotation: UPF0070 protein YfgM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 211 transmembrane" amino acids 21 to 38 (18 residues), see Phobius details PF09976: TPR_21" amino acids 11 to 207 (197 residues), 191.3 bits, see alignment E=7.7e-61

Best Hits

KEGG orthology group: None (inferred from 76% identity to pap:PSPA7_1313)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (211 amino acids)

>OH686_17540 UPF0070 protein YfgM (Pseudomonas sp. S08-1)
MTEEEQIAQMKDWWQRNGKPLLTGGALALAVVVGWQAWQQYQTNQAQGGGALYQQLLETT
LTPTGQPDAGKVTELADKLKSEYGGSAYAQYAGLFVAKVAVDNAKLDDAVAELKPLVDKP
ADATIGELARQRLARVLAAQGKTEEGLKLLEGEADKAWQASREELKGDLLVQLGRSDEAH
VAYQKAKDSLSEDAAVGGLQMKLDDLAKGDA