Protein Info for OH686_15880 in Pseudomonas sp. S08-1

Annotation: Predicted hydroxymethylpyrimidine transporter CytX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 transmembrane" amino acids 24 to 45 (22 residues), see Phobius details amino acids 51 to 75 (25 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 138 to 161 (24 residues), see Phobius details amino acids 168 to 186 (19 residues), see Phobius details amino acids 202 to 223 (22 residues), see Phobius details amino acids 235 to 261 (27 residues), see Phobius details amino acids 269 to 288 (20 residues), see Phobius details amino acids 314 to 333 (20 residues), see Phobius details amino acids 339 to 360 (22 residues), see Phobius details amino acids 372 to 392 (21 residues), see Phobius details amino acids 398 to 416 (19 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 12 to 397 (386 residues), 73.8 bits, see alignment E=6.6e-25 TIGR02358: putative hydroxymethylpyrimidine transporter CytX" amino acids 23 to 411 (389 residues), 408.3 bits, see alignment E=1.9e-126

Best Hits

KEGG orthology group: None (inferred from 75% identity to pfl:PFL_0539)

Predicted SEED Role

"Predicted hydroxymethylpyrimidine transporter CytX" in subsystem Thiamin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (422 amino acids)

>OH686_15880 Predicted hydroxymethylpyrimidine transporter CytX (Pseudomonas sp. S08-1)
MNTPNYSPNLAVPLTERAFGARDLLVLWFSLGMGLMVLQAGALLAPGLGLAGSLLALVLG
VGLGALLLGAVGVIGSDTGMASMAALRLSLGRHGATLPALLNLLQLIGWGAFEIIVMRDA
ASLLAGKFLGADSAWTNATLWTLFFGALATLLAVAGPLAFVRRVLRQWGIWLLLGACAWL
TWNLFAKADLAALWARPGDGSMSFALGFDLAIAMPLSWLPLIADYSRFGKRAGGVFAGAA
LGFFIGCLWLMSLGVAYTLAFAAPEEANSLLLALAGAGMGIPLLLILLDESEKAFADIHS
AAVSSGTLLPFRVEHLALAIGVLCTLIAWFAPLAQYEHFLLLIGSVFAPLFGVVLMDHFV
LRRRQLPSSVPLLRWDSLLAWVCGVATFHVLVNFDPAVGATLPALGLAAALQLLMGKLAG
RG