Protein Info for OH686_15805 in Pseudomonas sp. S08-1

Annotation: Aspartyl protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 175 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details TIGR02281: clan AA aspartic protease, TIGR02281 family" amino acids 54 to 170 (117 residues), 109.8 bits, see alignment E=4.7e-36 PF13650: Asp_protease_2" amino acids 68 to 152 (85 residues), 82 bits, see alignment E=6.2e-27 PF13975: gag-asp_proteas" amino acids 68 to 156 (89 residues), 95.4 bits, see alignment E=3.9e-31 PF00077: RVP" amino acids 70 to 159 (90 residues), 20.8 bits, see alignment E=5.9e-08

Best Hits

KEGG orthology group: K06985, aspartyl protease family protein (inferred from 74% identity to pmk:MDS_0675)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (175 amino acids)

>OH686_15805 Aspartyl protease (Pseudomonas sp. S08-1)
MSDRPAGQRAARVMLILAWVAALALATHWFGNWEEQRDNPNRQPQSVHGDGYIEVRLASS
RGGHYVLDGQIDGRTVTFLLDTGATAVAVPQKLAGELGLQPGAPVQIRTANGTVTGARTR
LDLLQLGDIQLRDVAALITPGMDGDEVLLGMSALKQLEFTQKGGTLVLRQSTSLK