Protein Info for OH686_12905 in Pseudomonas sp. S08-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

Swiss-Prot: 84% identical to PHAZ_PSEFL: Poly(3-hydroxyoctanoate) depolymerase (phaZ) from Pseudomonas fluorescens

KEGG orthology group: K05974, [EC: 3.1.1.76] (inferred from 49% identity to bba:Bd3709)

MetaCyc: 84% identical to poly(3-hydroxyoctanoate) depolymerase subunit (Pseudomonas fluorescens GK13)
Poly(3-hydroxyoctanoate) depolymerase. [EC: 3.1.1.76]

Predicted SEED Role

No annotation

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.1.76

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (277 amino acids)

>OH686_12905 hypothetical protein (Pseudomonas sp. S08-1)
MIAFRTLFCCLLLCFTLPAAMAASRCSERPKSLLLPAKVSCSHQTTWIDSGVVGARQVIY
QTPLGTPPSGGWPAVLIYQGSFFPLDNFTYYSNQPFGGFYEGKLVRALLDNGYAVIAPSA
PADLFWQTNIPGLAQAYELSTDYDFLGNVLAAIAAGHFGPLNAQRQYATGISSGGYNTSR
MAVSFPGRFRALAIQSGSYATCGGPLCVIPELPSDHPPTLFLHGFVDVVVPWWSMDLYYD
RLLQQGVETARHTEALGGHEWFAASPGKILAWFNAHP