Protein Info for OH686_12210 in Pseudomonas sp. S08-1

Annotation: ribosome biogenesis GTP-binding protein YsxC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 216 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR03598: ribosome biogenesis GTP-binding protein YsxC" amino acids 14 to 198 (185 residues), 233.2 bits, see alignment E=9.3e-74 PF01926: MMR_HSR1" amino acids 33 to 150 (118 residues), 61 bits, see alignment E=6e-21

Best Hits

Swiss-Prot: 88% identical to ENGB_PSEMY: Probable GTP-binding protein EngB (engB) from Pseudomonas mendocina (strain ymp)

KEGG orthology group: K03978, GTP-binding protein (inferred from 89% identity to pmk:MDS_0171)

Predicted SEED Role

"GTP-binding protein EngB" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (216 amino acids)

>OH686_12210 ribosome biogenesis GTP-binding protein YsxC (Pseudomonas sp. S08-1)
MSSKNPILGLCQQATFLISAAKVDQCPDDQGLEVAFAGRSNAGKSSALNTLTHASLARTS
KTPGRTQLLNFFRLDDERRLVDLPGYGYAKVPIPLKQHWQKHLEAYLGSRESLCGLVLMM
DIRHPLTEFDCMMLDWSKASGMPLHILLTKADKLTFGAAKNALLKVRQEIRKEWGDDVAS
IQLFSAPKRMGVEEAQLVLAQWLGLIEDEEEAGEQA