Protein Info for OH686_10840 in Pseudomonas sp. S08-1

Annotation: Protein yceI precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF04264: YceI" amino acids 25 to 187 (163 residues), 154.2 bits, see alignment E=1.7e-49

Best Hits

Swiss-Prot: 85% identical to Y419_PSEMY: UPF0312 protein Pmen_0419 (Pmen_0419) from Pseudomonas mendocina (strain ymp)

KEGG orthology group: None (inferred from 85% identity to pmy:Pmen_0419)

Predicted SEED Role

"Protein yceI precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (191 amino acids)

>OH686_10840 Protein yceI precursor (Pseudomonas sp. S08-1)
MLKQSLAALTLGAALFAGQAMAADYAIDKEGQHAFINFKISHLGYSWLYGTFKDFDGSFS
FDAKAPEASKVSVKINTASVDSNHAERDKHLRSGDFLNVDKNPTATFESTSVKSTGEGTA
DITGNLTLNGVTKPVVIAAKFIGEGSDPWGGYRAGFEGSTKLKLKDFDIQKDLGPASQEV
ELILSVEGVRQ